Factsheet for Solyc10g083840.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g073730.2.1
Solyc02g082060.1.1
Solyc05g007200.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G53180.1	Solyc05g007200.2.1	AT1G14340.1	21798944
AT3G53180.1	Solyc01g073730.2.1	AT2G31955.1	21798944
AT3G53180.1	Solyc02g082060.1.1	AT4G25660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g056390.1.1	Tomato	cytosol, nucleus	33.54	49.54
Solyc01g056430.1.1	Tomato	cytosol	59.63	29.09
KRH75546	Soybean	plastid	34.16	23.91
GSMUA_AchrUn_...	Banana	cytosol	45.34	22.81
KRH32567	Soybean	endoplasmic reticulum	44.1	16.47
Solyc06g011290.1.1	Tomato	cytosol	36.65	15.13
Solyc10g083850.1.1	Tomato	cytosol	55.9	10.8
VIT_08s0007g04670.t01	Wine grape	cytosol	55.28	10.6
CDX73575	Canola	cytosol	51.55	10.12
AT3G53180.1	Thale cress	cytosol	52.8	9.98
Bra028548.1-P	Field mustard	cytosol	50.31	9.91
CDY13313	Canola	cytosol	50.31	9.9
KRH32570	Soybean	cytosol, nucleus	50.31	9.69
CDX67559	Canola	cytosol	49.69	9.62
CDX78151	Canola	cytosol	49.69	9.45
Bra006975.1-P	Field mustard	cytosol	49.69	9.45
HORVU1Hr1G038060.9	Barley	cytosol	45.34	8.65
Os10t0456500-02	Rice	plasma membrane	45.34	8.64
TraesCS1D01G141800.1	Wheat	golgi	44.72	8.55
TraesCS1B01G158600.1	Wheat	cytosol	44.72	8.55
TraesCS1A01G143000.1	Wheat	cytosol	44.1	8.44
Zm00001d032815_P011	Maize	cytosol	44.1	8.43
TraesCS6D01G065600.1	Wheat	cytosol	41.61	8.22
EER91525	Sorghum	cytosol	42.86	8.19
HORVU6Hr1G012290.5	Barley	cytosol	38.51	7.35
Zm00001d021367_P001	Maize	cytosol	3.11	2.42
Solyc06g011330.1.1	Tomato	cytosol	1.86	1.01
Solyc10g083550.1.1	Tomato	cytosol	1.24	0.5
Zm00001d031055_P001	Maize	cytosol	0.0	0.0
Zm00001d033947_P001	Maize	cytosol	0.0	0.0
Zm00001d044569_P001	Maize	cytosol	0.0	0.0
Zm00001d047936_P001	Maize	cytosol	0.0	0.0
Solyc10g083830.1.1	Tomato	extracellular	0.0	0.0
Solyc01g056450.1.1	Tomato	cytosol	0.0	0.0
Solyc01g056400.1.1	Tomato	endoplasmic reticulum, extracellular	0.0	0.0
PGSC0003DMT400072665	Potato	cytosol	0.0	0.0
GSMUA_AchrUn_...	Banana	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:Solyc10g083840.1.1	EnsemblPlantsGene:Solyc10g083840.1	Gene3D:3.20.20.140	PANTHER:PTHR20852	PANTHER:PTHR20852:SF65	UniParc:UPI000276A0B9
UniProt:K4D3H0	MapMan:35.2	:	:	:	:

Description

No Description!

Coordinates

chr10:-:63578064..63582215

Molecular Weight (calculated)

18006.6 Da

IEP (calculated)

6.020

GRAVY (calculated)

-0.024

Length

161 amino acids

Sequence
(BLAST)

001: MEKFAELKKI AESVELVDAH AHNIVAIDST VPFLNCFSEA AGDALFDVPH AINFKRSLKE IAEIYGSSLS LHAVQESRQR LGLESSTAVC FKAAKISVLL
101: IDDGIELDKK FDIKWHRNFV PTVGRILRVE RVAEKILEKG SNGTWTLGSF MEIFTEELNS R

Best Arabidopsis Sequence Match ( AT3G53180.1 )
(BLAST)

001: MEFSELKEAI EKIELVDAHA HNIVSLDSSF PFIGTFSEAA GDALTFAPHS LSFKRNLREI AQLYGTEVSL EAVEEHRKTS GLDSFTSKCF KEARISALLI
101: DDGLKLDKKH DIEWHRNFVP FVGRVLRIET LAEQILEEEC PGGYFYGSES TEPPVWDLDS FTKTFVERLN SLVPEIVALK TIAAYRSGLD IDTYVSKEVA
201: ENGLVEVLRA GKPVRIGNKG LIDYILTISL EVAVRRDLPL QIHTGFGDKD LDLRLSNPLH LRTLLEDKRF GKCRIVLLHA AYPFSKEASF LSSVYPQVYL
301: DFGLAVPKLS VHGMVSSVKE LLDLASIKKV MFSTDGYASP ETYYLGAKKA REVIFLVLSD ACASGDLSLM EAIDAAKDIF SRNSIGFYKL NIDTDSSSPQ
401: NIISPKLKIK EPDVQEDSSS FVRIIWVDTS GQQRCRAVQA QRFNRSVKKN GVGLTFASMG MTSFTDGPAE ESKLTGVGEI RLVPDLSTKQ TIPWTKQESM
501: VLADMQLKPG EAWGYCPRET LRRVAKVLKD EFDLVMNAGF ENEFYLLKNV VREGKEEYMP FDFGPYCATS SFDAASPIFH DIVPALESLN IEVEQFHAES
601: GKGQFEVSLG HTIASHAADN LVYTREVIRS VARKQGLLAT FVPKYDYCDI GSGSHVHLSL WKNGENVFPA SNNSSSHGIS SVGEEFMAGV LFHLPSILAI
701: IAPLPNSYDR IQPNTWSGAF QCWGKENREA ALRAASPPGT PDGLVTNFEI KSFDGSANPH LGLAVIMAAG IDGLRRHLQL PTPIDINPAD VAATLNRLPE
801: TLSEAVEALD KDKVLHDLLG QKLLVAIKGV RKAEVEYYSK NPDAYKQLIH RY

Arabidopsis Description

Nodulin/glutamine synthase-like protein [Source:UniProtKB/TrEMBL;Acc:F4J9A0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.