Factsheet for Solyc05g007200.2.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
mitochondrion 3
plastid 2
extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Plant-mPloc:	plastid
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g060130.2.1
Solyc01g100350.2.1
Solyc01g103370.2.1
Solyc02g083550.1.1
Solyc02g093000.2.1
Solyc02g093550.2.1
Solyc03g006270.2.1
Solyc06g073900.2.1
Solyc07g045310.2.1
Solyc07g064930.2.1
Solyc08g006800.1.1
Solyc08g078220.2.1
Solyc10g008840.2.1
Solyc11g071790.1.1
Solyc12g014470.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G14340.1	Solyc06g073900.2.1	AT1G08480.1	21798944
AT1G14340.1	Solyc11g071790.1.1	AT1G08480.1	21798944
AT1G14340.1	Solyc01g060130.2.1	AT1G09180.1	21798944
AT1G14340.1	Solyc01g100350.2.1	AT1G09180.1	21798944
AT1G14340.1	Solyc01g060130.2.1	AT1G56330.1	21798944
AT1G14340.1	Solyc01g100350.2.1	AT1G56330.1	21798944
AT1G14340.1	Solyc02g093550.2.1	AT3G01660.1	21798944
AT1G14340.1	Solyc07g045310.2.1	AT3G07670.1	21798944
AT1G14340.1	Solyc01g103370.2.1	AT3G11730.1	21798944
AT1G14340.1	Solyc02g093000.2.1	AT3G50110.1	21798944
AT1G14340.1	Solyc01g060130.2.1	AT4G02080.1	21798944
AT1G14340.1	Solyc01g100350.2.1	AT4G02080.1	21798944
AT1G14340.1	Solyc08g006800.1.1	AT4G31830.1	21798944
AT1G14340.1	Solyc08g078220.2.1	AT5G47310.1	21798944
AT1G14340.1	Solyc07g064930.2.1	AT5G55200.1	21798944
AT1G14340.1	Solyc12g014470.1.1	AT5G55200.1	21798944
AT1G14340.1	Solyc03g006270.2.1	AT5G60860.1	21798944
AT1G14340.1	Solyc10g008840.2.1	AT5G60860.1	21798944
AT1G14340.1	Solyc02g083550.1.1	AT5G66110.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400065786	Potato	cytosol, nucleus, plastid	77.38	96.33
VIT_01s0026g01970.t01	Wine grape	cytosol, nucleus, plastid	54.1	67.07
CDX96860	Canola	nucleus	49.18	61.48
CDY62016	Canola	nucleus	46.56	60.68
Bra016705.1-P	Field mustard	nucleus	48.52	60.66
Bra019660.1-P	Field mustard	cytosol	48.52	60.66
CDY49093	Canola	cytosol	48.2	60.0
GSMUA_Achr3P19960_001	Banana	cytosol	47.54	59.92
CDX84035	Canola	nucleus	47.87	59.84
AT1G14340.1	Thale cress	nucleus	47.54	59.43
KRH69305	Soybean	nucleus	52.79	55.33
Solyc02g067390.2.1	Tomato	cytosol	43.93	52.55
Zm00001d026425_P003	Maize	cytosol	41.31	51.64
TraesCS2D01G523400.1	Wheat	nucleus	41.31	51.64
TraesCS2B01G551100.1	Wheat	nucleus	41.31	51.64
TraesCS2A01G521600.1	Wheat	nucleus	40.98	51.23
HORVU2Hr1G115210.1	Barley	cytosol, nucleus, plastid	41.97	51.0
EES12950	Sorghum	cytosol, nucleus, plastid	40.0	50.0
Zm00001d002122_P007	Maize	cytosol, nucleus, plastid	39.67	48.59
Os04t0641400-02	Rice	plastid	44.59	47.39
Solyc08g076530.2.1	Tomato	plastid	32.46	35.23
Solyc10g076890.1.1	Tomato	cytosol	31.48	35.16
Solyc03g097110.2.1	Tomato	nucleus	29.51	32.37
Solyc06g072770.2.1	Tomato	nucleus	27.54	23.08

Protein Annotations

EnsemblPlants:Solyc05g007200.2.1	EnsemblPlantsGene:Solyc05g007200.2	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf	InterPro:RRM_dom
InterPro:Vip1-like_RRM_plant	PANTHER:PTHR44136	PANTHER:PTHR44136:SF7	PFAM:PF00076	PFscan:PS50102	SEG:seg
SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0002765A9B	UniProt:K4BWP6	MapMan:35.1	:

Description

No Description!

Coordinates

chr5:-:1811040..1816032

Molecular Weight (calculated)

33032.5 Da

IEP (calculated)

6.794

GRAVY (calculated)

-0.183

Length

305 amino acids

Sequence
(BLAST)

001: MQKNQLFYLL QHTYTAIFYY RGAHQQKILH IYGTEYKGTS IAVFIPTPFS HTFHLNTSEA DMNPGGYTVE VTGLSPAATE KDVQEFFAFC GAIEHVEIVR
101: AGEHASTAYV TFRNPHALET AVLLSGAAIL DQRVCITSWG HYQDDFDYWN HSSWKPQEDC HSSDSQGHHF VSSAGEAVTL TQDVVKTMLS QGYVLGKGAL
201: GKAKAFDESH GLSATAVSKV ADLSERIGLT DKFCAGVEVA RSVDQRYHIS DTTRSAVSAT GRTAISAATA VINSSYFSKG ALWMSGALSK AAQAAADLGS
301: RGTNK

Best Arabidopsis Sequence Match ( AT1G14340.1 )
(BLAST)

001: MDHQFGYGVE VTGLSPSVTH NDLIDFFSFS GTIQDIDIVR SGEQACTAYV MFKDSYSQET AVLLTGATIL DQRVCITRWG QHHEEFDFWN ATSRGFEDES
101: DSQHYAQRSE FNAGEAVTKA QEVVKIMLAT GFVLGKDALS KAKAFDESHG VSAAAVARVS QLEQRIGLTD KIFTGLEAVR MTDQRYHVSD TAKSAVFATG
201: RTAAAAATSV VNSSYFSSGA LWLSGALERA AKAASDLGTR GSRQ

Arabidopsis Description

RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q949S4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.