Factsheet for Bra019660.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000895.1-P
Bra001418.1-P
Bra002620.1-P
Bra002925.1-P
Bra009662.1-P
Bra010218.1-P
Bra011302.1-P
Bra012908.1-P
Bra018576.1-P
Bra018622.1-P
Bra024431.1-P
Bra024951.1-P
Bra027937.1-P
Bra030729.1-P
Bra031843.1-P
Bra036294.1-P
Bra038169.1-P
Bra038676.1-P
Bra040022.1-P
Bra040545.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G14340.1	Bra018622.1-P	AT1G08480.1	21798944
AT1G14340.1	Bra030729.1-P	AT1G08480.1	21798944
AT1G14340.1	Bra018576.1-P	AT1G09180.1	21798944
AT1G14340.1	Bra027937.1-P	AT1G56330.1	21798944
AT1G14340.1	Bra038169.1-P	AT1G56330.1	21798944
AT1G14340.1	Bra040545.1-P	AT3G01660.1	21798944
AT1G14340.1	Bra040022.1-P	AT3G07670.1	21798944
AT1G14340.1	Bra001418.1-P	AT3G11730.1	21798944
AT1G14340.1	Bra038676.1-P	AT3G11730.1	21798944
AT1G14340.1	Bra012908.1-P	AT3G50110.1	21798944
AT1G14340.1	Bra000895.1-P	AT4G02080.1	21798944
AT1G14340.1	Bra036294.1-P	AT4G02080.1	21798944
AT1G14340.1	Bra010218.1-P	AT4G31830.1	21798944
AT1G14340.1	Bra011302.1-P	AT4G31830.1	21798944
AT1G14340.1	Bra024951.1-P	AT5G47310.1	21798944
AT1G14340.1	Bra002925.1-P	AT5G55200.1	21798944
AT1G14340.1	Bra002620.1-P	AT5G58750.1	21798944
AT1G14340.1	Bra024431.1-P	AT5G65925.1	21798944
AT1G14340.1	Bra031843.1-P	AT5G65925.1	21798944
AT1G14340.1	Bra009662.1-P	AT5G66110.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY49093	Canola	cytosol	98.77	98.37
Bra016705.1-P	Field mustard	nucleus	89.34	89.34
AT1G14340.1	Thale cress	nucleus	86.07	86.07
VIT_01s0026g01970.t01	Wine grape	cytosol, nucleus, plastid	65.16	64.63
PGSC0003DMT400065786	Potato	cytosol, nucleus, plastid	60.66	60.41
GSMUA_Achr3P19960_001	Banana	cytosol	56.97	57.44
KRH69305	Soybean	nucleus	63.52	53.26
EES12950	Sorghum	cytosol, nucleus, plastid	51.23	51.23
Zm00001d026425_P003	Maize	cytosol	51.23	51.23
TraesCS2B01G551100.1	Wheat	nucleus	50.41	50.41
TraesCS2D01G523400.1	Wheat	nucleus	50.41	50.41
TraesCS2A01G521600.1	Wheat	nucleus	50.0	50.0
HORVU2Hr1G115210.1	Barley	cytosol, nucleus, plastid	50.82	49.4
Zm00001d002122_P007	Maize	cytosol, nucleus, plastid	50.41	49.4
Solyc05g007200.2.1	Tomato	mitochondrion	60.66	48.52
Os04t0641400-02	Rice	plastid	52.87	44.95
Bra001017.1-P	Field mustard	cytosol, nucleus, plastid	45.9	44.44
Bra023585.1-P	Field mustard	nucleus	38.52	37.15
Bra008589.1-P	Field mustard	cytosol	39.34	36.64
Bra006373.1-P	Field mustard	cytosol	37.7	35.25
Bra039914.1-P	Field mustard	cytosol	37.7	34.98
Bra040177.1-P	Field mustard	nucleus	38.93	31.46
Bra012646.1-P	Field mustard	nucleus	38.52	30.13
Bra024988.1-P	Field mustard	vacuole	36.48	26.73
Bra012647.1-P	Field mustard	cytosol	20.49	24.04

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.1	EnsemblPlantsGene:Bra019660	EnsemblPlants:Bra019660.1	EnsemblPlants:Bra019660.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	UniProt:M4DT17
InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR44136	PANTHER:PTHR44136:SF7	InterPro:RBD_domain_sf
InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI000253E6C7	InterPro:Vip1-like_RRM_plant	SEG:seg

Description

AT1G14340 (E=7e-103) | RNA recognition motif (RRM)-containing protein

Coordinates

chrA06:+:5124414..5125361

Molecular Weight (calculated)

26092.4 Da

IEP (calculated)

6.307

GRAVY (calculated)

-0.221

Length

244 amino acids

Sequence
(BLAST)

001: MDHQNGYGVE VTGLSPAVTE KDLVDFFSFS GAIEHIDIVK SGEQACTAYV MFKDSYSQET AVLLTGATIL DQRVCITRWG QHHQEFDFWN AAPRSFEDEA
101: NSHPHPQRGE FNAGEAVTKA QEVVKSMLAT GFVLGKDALT KAKAFDESHG VSAAAVARVS QLDQRFGLAD KIFAGVEAVR LTDQKYHVSD KAKSAVSATG
201: RTAAAAASSV VNSSYFSSGA LWLSGALERA AKAASDLGSR GPRQ

Best Arabidopsis Sequence Match ( AT1G14340.1 )
(BLAST)

001: MDHQFGYGVE VTGLSPSVTH NDLIDFFSFS GTIQDIDIVR SGEQACTAYV MFKDSYSQET AVLLTGATIL DQRVCITRWG QHHEEFDFWN ATSRGFEDES
101: DSQHYAQRSE FNAGEAVTKA QEVVKIMLAT GFVLGKDALS KAKAFDESHG VSAAAVARVS QLEQRIGLTD KIFTGLEAVR MTDQRYHVSD TAKSAVFATG
201: RTAAAAATSV VNSSYFSSGA LWLSGALERA AKAASDLGTR GSRQ

Arabidopsis Description

RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q949S4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.