Factsheet for Bra040022.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra021502.1-P
Bra021503.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G07670.1	Bra021502.1-P	AT3G13720.1	21798944
AT3G07670.1	Bra021503.1-P	AT3G13720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY22127	Canola	plastid	99.61	99.61
AT3G07670.1	Thale cress	plastid	91.72	92.26
VIT_12s0057g01250.t01	Wine grape	plastid	72.19	73.64
PGSC0003DMT400044855	Potato	plastid	71.4	71.83
Solyc07g045310.2.1	Tomato	nucleus	70.41	71.26
KRH17729	Soybean	plastid	66.08	67.13
GSMUA_Achr3P10760_001	Banana	plastid	66.47	67.13
Zm00001d051668_P001	Maize	plastid	65.68	66.2
Os02t0725200-01	Rice	plasma membrane	65.48	66.14
EES07338	Sorghum	plastid	64.69	65.73
TraesCS6A01G286800.2	Wheat	plastid	64.5	64.88
TraesCS6B01G315800.1	Wheat	plastid	64.3	64.3
TraesCS6D01G267500.2	Wheat	plastid	64.3	64.17
HORVU6Hr1G072050.4	Barley	mitochondrion, plastid	64.3	62.45
Zm00001d051669_P002	Maize	plastid	60.75	60.27
Zm00001d034120_P001	Maize	cytosol	9.07	40.35
Bra023454.1-P	Field mustard	plastid	24.65	24.75
Bra008769.1-P	Field mustard	plastid	23.67	23.26
Bra007140.1-P	Field mustard	mitochondrion	17.95	20.4
Bra026865.1-P	Field mustard	plastid	18.74	19.63
Bra007135.1-P	Field mustard	cytosol, mitochondrion, plastid	12.43	19.27
Bra040023.1-P	Field mustard	endoplasmic reticulum	5.52	13.46
Bra029668.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	5.52	13.46
Bra028018.1-P	Field mustard	cytosol	3.75	13.29

Protein Annotations

Gene3D:3.90.1410.10	Gene3D:3.90.1420.10	MapMan:50.2.1	EnsemblPlantsGene:Bra040022	EnsemblPlants:Bra040022.1	EnsemblPlants:Bra040022.1-P
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009536
GO:GO:0016740	GO:GO:0030785	GO:GO:0032259	InterPro:IPR001214	InterPro:IPR011192	InterPro:IPR036464
UniProt:M4FFZ8	PFAM:PF00856	PFAM:PF09273	PIRSF:PIRSF009328	PFscan:PS50280	PANTHER:PTHR13271
PANTHER:PTHR13271:SF81	InterPro:Rubisco_LSMT_MeTrfase_plant	InterPro:Rubisco_LSMT_subst-bd	InterPro:Rubisco_LSMT_subst-bd_sf	InterPro:SET_dom	SMART:SM00317
SUPFAM:SSF81822	SUPFAM:SSF82199	UniParc:UPI000254475F	SEG:seg	:	:

Description

AT3G07670 (E=3e-258) | SET domain-containing protein

Coordinates

chrA01:-:27878588..27881429

Molecular Weight (calculated)

57708.0 Da

IEP (calculated)

8.671

GRAVY (calculated)

-0.395

Length

507 amino acids

Sequence
(BLAST)

001: MAKASNFLQS TLLPSSSPLR NLRSQPLPLS FPPLPSSRHR PITIHCSVSA GETTKRSLEE APDISWGCEI DSVENATSLQ RWLSDSGLPP QKMAIDKVDI
101: GERGLVASQS LRKGEKLLFV PPSLVISADS VWTNGEAGEV MKRYDVPDWP LLATYLISEA SLQKGSRWFN YISALPRQPY SLLYWTRTEL DMYLEASQIR
201: ERAIERITNV VGTYEDLRSR IFSKHPNLFP KEVFNDETFK WSFGILFSRL VRLPSMDGRF ALVPWADMLN HNCEVETYLD YDKSSKGVVF TADRPYQPGE
301: QVFISYGNKS NGELLLSYGF VPREGTNPSD SVELAMSLRK NDTCYKEKLD ALKKHGLSTP QCFPVRITGW PLELMAYAYL VVSPPDMSNS FEEMAKAASN
401: KSSTNKDLKY PEIEEEALQF ILDSCETSIS KYSRFLKESG SMDLDITSPK QLNRKAFLKQ LAVDLSTSER RILYRAQYIL RRRLRDIRSG ELKALRLFSG
501: IRNFFKQ

Best Arabidopsis Sequence Match ( AT3G07670.1 )
(BLAST)

001: MAKACLLQST LLPAYSPLHK LRNQNITLSF SPLPLSRCRP GIHCSVSAGE TTIQSMEEAP KISWGCEIDS LENATSLQNW LSDSGLPPQK MAIDRVDIGE
101: RGLVASQNLR KGEKLLFVPP SLVISADSEW TNAEAGEVMK RYDVPDWPLL ATYLISEASL QKSSRWFNYI SALPRQPYSL LYWTRTELDM YLEASQIRER
201: AIERITNVVG TYEDLRSRIF SKHPQLFPKE VFNDETFKWS FGILFSRLVR LPSMDGRFAL VPWADMLNHN CEVETFLDYD KSSKGVVFTT DRPYQPGEQV
301: FISYGNKSNG ELLLSYGFVP REGTNPSDSV ELALSLRKND KCYEEKLDAL KKHGLSTPQC FPVRITGWPM ELMAYAYLVV SPPDMRNNFE EMAKAASNKT
401: STKNDLKYPE IEEDALQFIL DSCETSISKY SRFLKESGSM DLDITSPKQL NRKAFLKQLA VDLSTSERRI LYRAQYILRR RLRDIRSGEL KALRLFSGLR
501: NFFK

Arabidopsis Description

Putative ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit N-methyltransferase I [Source:UniProtKB/TrEMBL;Acc:Q9S7D2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.