Skip to main content
crop-pal logo
Field mustard
Search for another protein from :
Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion, plastid, cytosol

Predictor Summary:
  • nucleus 2
  • mitochondrion 3
  • cytosol 1
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, mitochondrion, plastid
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
iPSORT:mitochondrion
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:plastid
YLoc:mitochondrion
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX93745 Canola cytosol 24.46 50.0
Bra028018.1-P Field mustard cytosol 20.49 46.85
Bra007140.1-P Field mustard mitochondrion 53.21 39.01
AT3G55080.1 Thale cress mitochondrion 53.52 37.8
VIT_13s0067g03620.t01 Wine grape cytosol 39.14 28.44
KRH36235 Soybean mitochondrion 36.7 26.26
TraesCS3D01G544800.2 Wheat mitochondrion 31.8 22.86
Solyc06g036700.1.1 Tomato mitochondrion 13.76 22.17
GSMUA_Achr11P... Banana mitochondrion 33.64 21.48
TraesCS3A01G539300.2 Wheat mitochondrion 29.97 21.08
Os01t0976450-00 Rice mitochondrion 22.63 19.32
Bra008769.1-P Field mustard plastid 20.18 12.79
Bra023454.1-P Field mustard plastid 19.27 12.48
Bra040022.1-P Field mustard plastid 19.27 12.43
Bra026865.1-P Field mustard plastid 16.51 11.16
Bra029668.1-P Field mustard endoplasmic reticulum, extracellular, vacuole 5.2 8.17
Bra040023.1-P Field mustard endoplasmic reticulum 5.2 8.17
TraesCS3B01G605100.1 Wheat mitochondrion 21.41 5.61
Protein Annotations
EnsemblPlants:Bra007135.1EnsemblPlants:Bra007135.1-PEnsemblPlantsGene:Bra007135Gene3D:3.90.1410.10PANTHER:PTHR13271PANTHER:PTHR13271:SF11
SUPFAM:SSF82199UniParc:UPI0002542A1AUniProt:M4CSE3MapMan:35.2::
Description
AT3G55080 (E=2e-045) | SET domain-containing protein
Coordinates
chrA09:-:27494644..27497549
Molecular Weight (calculated)
37148.7 Da
IEP (calculated)
7.326
GRAVY (calculated)
-0.243
Length
327 amino acids
Sequence
(BLAST)
001: MHTHSQSPKL RTLFASKVIH GGDCNLKVPF NAMLRVYLTD EVGNIGKVAT LLMIKRNTGQ NSRWFPYISR LPQLAEMHSA IFWDENEFSM IRCSAVHKET
101: VKQKARIEKE FSLVSQLTLE NFMYAYALDS GISCVGNLKR HITGTFFSMV LRFGLSASIV LSDEDNQLSE VQIQMDVPSD YPLRNMKLEL LQSHYTPSVN
201: IFHSSYDTFT IKEVKGKGIP QSPRSFARLL CCTSPQGAQF KILTVIMISA ELNDLSTEAE QNDGRLARLP FKDRSKELEA HTIILSHINR LIEDHNVCIK
301: ELEASDYGFE SQKVYGLEGR WQEISSS
Best Arabidopsis Sequence Match ( AT3G55080.1 )
(BLAST)
001: MLFCISTVKL FGFQQRRNVS SLAKRFSLAG KLTLELQTQA SLDNNFLPWL ERIAGAKITN TLSIGKSTYG RSLFASKVIY AGDCMLKVPF NAQITPDELP
101: SDIRVLLSNE VGNIGMLAAV LIREKKMGQK SRWVPYISRL PQPAEMHSSI FWGEDELSMI RCSAVHQETV KQKAQIEKDF SFVAQAFKQH CPIVTERPDL
201: EDFMYAYALV GSRAWENSKR ISLIPFADFM NHDGLSASIV LRDEDNQLSE VTADRNYSPG DEVFIKYGEF SNATLMLDFG FTFPYNIHDE VQIQMDVPND
301: DPLRNMKLGL LQTHHTRTVK DINIFHSSCD TFTIKEVKSA IGKGKGIPQS LRAFARVLCC IIPQELNDLS KEAAQNDGRL ARLPFKDGNR ELEAHKILLS
401: HINRLIEDHS VCIKEMEECY FVSQRFAVRR QMARDLLYGE LRVLRSAAEW LNHYCTTLLS ETM
Arabidopsis Description
At3g55080 [Source:UniProtKB/TrEMBL;Acc:Q5PP40]
SUBAcon: [mitochondrion]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.