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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum

Predictor Summary:
  • nucleus 2
  • extracellular 4
  • endoplasmic reticulum 7
  • vacuole 4
  • plasma membrane 5
  • golgi 4
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum
Any Predictor:nucleus, plastid, secretory
BaCelLo:nucleus
iPSORT:secretory
MultiLoc:endoplasmic reticulum
Plant-mPloc:nucleus, plasma membrane, plastid
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:endoplasmic reticulum
YLoc:endoplasmic reticulum
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY07978 Canola endoplasmic reticulum 98.56 98.09
Bra029668.1-P Field mustard endoplasmic reticulum, extracellular, vacuole 98.08 98.08
Bra026865.1-P Field mustard plastid 14.42 6.2
Bra040022.1-P Field mustard plastid 13.46 5.52
Bra007140.1-P Field mustard mitochondrion 11.54 5.38
Bra007135.1-P Field mustard cytosol, mitochondrion, plastid 8.17 5.2
Bra008769.1-P Field mustard plastid 12.5 5.04
Bra023454.1-P Field mustard plastid 12.02 4.95
Solyc06g036670.1.1 Tomato cytosol 4.33 4.04
Bra028018.1-P Field mustard cytosol 1.92 2.8
Protein Annotations
EnsemblPlants:Bra040023.1EnsemblPlants:Bra040023.1-PEnsemblPlantsGene:Bra040023GO:GO:0005575GO:GO:0016020GO:GO:0016021
InterPro:GOLD_domInterPro:GOLD_dom_sfInterPro:IPR009038InterPro:TMP21-relatedPANTHER:PTHR22811PANTHER:PTHR22811:SF50
PFAM:PF01105PFscan:PS50866SignalP:SignalP-noTMSMART:SM01190SUPFAM:SSF101576TMHMM:TMhelix
UniParc:UPI000254475EUniProt:M4FFZ9MapMan:22.3.5.1:::
Description
AT3G07680 (E=1e-116) | emp24/gp25L/p24 family protein
Coordinates
chrA01:-:27876799..27877948
Molecular Weight (calculated)
24253.9 Da
IEP (calculated)
6.370
GRAVY (calculated)
-0.239
Length
208 amino acids
Sequence
(BLAST)
001: MSLKATILII GLVWSFQAAL GIRFVIDREE CFSHKAEYEG DTLHVSFVVI KSDSQWHFNE DGVDLVIHGP TGEQVHDFRE QISAKHDFVV QKKGVYRFCF
101: TNKSPYHETI DFDVQLGHFA YYDQHAKDEH FTPLMEQISK LEEALYNIQF EQHWLEAQTD RQAIVNENMS KRAVHKALFE SFALIGASVL QVYLLRRLFE
201: RKLGMSRV
Best Arabidopsis Sequence Match ( AT3G07680.1 )
(BLAST)
001: MSLKGTIVLL GLLWSFQATL GIRFVIDREE CFSHKAEYEG DTLHVSFVVI KSDSQWHFNE DGVDLVIHGP TGEQIHDFRE QISAKHDFVV QKKGVYRFCF
101: TNKSPYHETI DFDVQLGHFA YYDQHAKDEH FTPLMEQISK LEEALYNIQF EQHWLEAQTD RQAIVNENMS KRAVHKALFE SFALIGASFL QVYLLRRLFE
201: RKLGMSRV
Arabidopsis Description
Transmembrane emp24 domain-containing protein p24beta2 [Source:UniProtKB/Swiss-Prot;Acc:Q9S7M9]
SUBAcon: [endoplasmic reticulum,extracellular]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.