Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- vacuole 1
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra007140.1-P | Field mustard | mitochondrion | 71.33 | 22.87 |
| Bra007135.1-P | Field mustard | cytosol, mitochondrion, plastid | 46.85 | 20.49 |
| AT3G55080.1 | Thale cress | mitochondrion | 60.84 | 18.79 |
| CDX73405 | Canola | mitochondrion | 39.16 | 18.12 |
| KRH36235 | Soybean | mitochondrion | 33.57 | 10.5 |
| VIT_13s0067g03620.t01 | Wine grape | cytosol | 32.17 | 10.22 |
| TraesCS3D01G544800.2 | Wheat | mitochondrion | 29.37 | 9.23 |
| TraesCS3A01G539300.2 | Wheat | mitochondrion | 26.57 | 8.17 |
| GSMUA_Achr11P... | Banana | mitochondrion | 25.87 | 7.23 |
| Bra026865.1-P | Field mustard | plastid | 21.68 | 6.4 |
| Solyc06g036700.1.1 | Tomato | mitochondrion | 8.39 | 5.91 |
| Bra008769.1-P | Field mustard | plastid | 17.48 | 4.84 |
| Bra023454.1-P | Field mustard | plastid | 16.08 | 4.55 |
| Os01t0976450-00 | Rice | mitochondrion | 11.19 | 4.18 |
| Bra040022.1-P | Field mustard | plastid | 13.29 | 3.75 |
| Bra029668.1-P | Field mustard | endoplasmic reticulum, extracellular, vacuole | 2.8 | 1.92 |
| Bra040023.1-P | Field mustard | endoplasmic reticulum | 2.8 | 1.92 |
| TraesCS3B01G605100.1 | Wheat | mitochondrion | 14.69 | 1.68 |
Protein Annotations
Description
AT3G55080 (E=3e-025) | SET domain-containing protein
Coordinates
chrA09:-:19299338..19307588
Molecular Weight (calculated)
16348.6 Da
IEP (calculated)
9.461
GRAVY (calculated)
-0.388
Length
143 amino acids
Sequence
(BLAST)
(BLAST)
001: MIRCSAVHKE TVKQKAWIEK EFSLVSQAFK EHLPKAIERP AQENFMYAYT LVGSRAWETS RGISLVQIQM DIPNDDPLRN MKLGLLQTHY TRSVKDINIF
101: HSSYDTFTIK EVKSATGKGI PQSLLAFCTS SLLYRSSRCS DQN
101: HSSYDTFTIK EVKSATGKGI PQSLLAFCTS SLLYRSSRCS DQN
001: MLFCISTVKL FGFQQRRNVS SLAKRFSLAG KLTLELQTQA SLDNNFLPWL ERIAGAKITN TLSIGKSTYG RSLFASKVIY AGDCMLKVPF NAQITPDELP
101: SDIRVLLSNE VGNIGMLAAV LIREKKMGQK SRWVPYISRL PQPAEMHSSI FWGEDELSMI RCSAVHQETV KQKAQIEKDF SFVAQAFKQH CPIVTERPDL
201: EDFMYAYALV GSRAWENSKR ISLIPFADFM NHDGLSASIV LRDEDNQLSE VTADRNYSPG DEVFIKYGEF SNATLMLDFG FTFPYNIHDE VQIQMDVPND
301: DPLRNMKLGL LQTHHTRTVK DINIFHSSCD TFTIKEVKSA IGKGKGIPQS LRAFARVLCC IIPQELNDLS KEAAQNDGRL ARLPFKDGNR ELEAHKILLS
401: HINRLIEDHS VCIKEMEECY FVSQRFAVRR QMARDLLYGE LRVLRSAAEW LNHYCTTLLS ETM
101: SDIRVLLSNE VGNIGMLAAV LIREKKMGQK SRWVPYISRL PQPAEMHSSI FWGEDELSMI RCSAVHQETV KQKAQIEKDF SFVAQAFKQH CPIVTERPDL
201: EDFMYAYALV GSRAWENSKR ISLIPFADFM NHDGLSASIV LRDEDNQLSE VTADRNYSPG DEVFIKYGEF SNATLMLDFG FTFPYNIHDE VQIQMDVPND
301: DPLRNMKLGL LQTHHTRTVK DINIFHSSCD TFTIKEVKSA IGKGKGIPQS LRAFARVLCC IIPQELNDLS KEAAQNDGRL ARLPFKDGNR ELEAHKILLS
401: HINRLIEDHS VCIKEMEECY FVSQRFAVRR QMARDLLYGE LRVLRSAAEW LNHYCTTLLS ETM
Arabidopsis Description
At3g55080 [Source:UniProtKB/TrEMBL;Acc:Q5PP40]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.