Factsheet for Solyc06g036700.1.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX93745	Canola	cytosol	34.48	43.75
CDX73405	Canola	mitochondrion	37.44	24.6
VIT_13s0067g03620.t01	Wine grape	cytosol	44.83	20.22
Os01t0976450-00	Rice	mitochondrion	33.99	18.02
KRH36235	Soybean	mitochondrion	38.92	17.29
AT3G55080.1	Thale cress	mitochondrion	36.95	16.2
CDY40200	Canola	mitochondrion	36.95	16.06
Bra007140.1-P	Field mustard	mitochondrion	32.51	14.8
TraesCS3D01G544800.2	Wheat	mitochondrion	31.53	14.07
TraesCS3A01G539300.2	Wheat	mitochondrion	32.02	13.98
GSMUA_Achr11P...	Banana	mitochondrion	34.98	13.87
Bra007135.1-P	Field mustard	cytosol, mitochondrion, plastid	22.17	13.76
Solyc05g013150.2.1	Tomato	plastid	23.65	10.3
Solyc05g013160.2.1	Tomato	plastid	23.65	9.84
Solyc02g068050.2.1	Tomato	plastid	18.72	8.84
Solyc07g045310.2.1	Tomato	nucleus	21.18	8.58
Bra028018.1-P	Field mustard	cytosol	5.91	8.39
TraesCS3B01G605100.1	Wheat	mitochondrion	25.62	4.17
Solyc06g036670.1.1	Tomato	cytosol	3.94	3.59
CDY40197	Canola	cytosol	0.99	1.18

Protein Annotations

EnsemblPlants:Solyc06g036700.1.1	EnsemblPlantsGene:Solyc06g036700.1	Gene3D:3.90.1410.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016279	GO:GO:0016740	GO:GO:0018026
GO:GO:0019538	PANTHER:PTHR13271	PANTHER:PTHR13271:SF11	SUPFAM:SSF82199	UniParc:UPI0002766145	UniProt:K4C535
MapMan:35.2	:	:	:	:	:

Description

No Description!

Coordinates

chr6:-:27178683..27180464

Molecular Weight (calculated)

23430.5 Da

IEP (calculated)

7.999

GRAVY (calculated)

-0.058

Length

203 amino acids

Sequence
(BLAST)

001: MLIFHRIIYS NTWRSPCSLL SIIRRLRCQF SFSNCFSKCY IDEECNDFLL WLEHKAGVEI SSLLSIGKFA NGRSLVARHP IKPGDCLLRV PYNVQLAPDN
101: LPRGINALLG DNVGNVAKVA LLILYEQKLG KKSEWDPYIS RLPRPEDMHN TIFWDDNELE MIQQSSLHQK TIMHKLFVEQ EFSTIKELGK VSISLSVCYF
201: TCF

Best Arabidopsis Sequence Match ( AT3G55080.1 )
(BLAST)

001: MLFCISTVKL FGFQQRRNVS SLAKRFSLAG KLTLELQTQA SLDNNFLPWL ERIAGAKITN TLSIGKSTYG RSLFASKVIY AGDCMLKVPF NAQITPDELP
101: SDIRVLLSNE VGNIGMLAAV LIREKKMGQK SRWVPYISRL PQPAEMHSSI FWGEDELSMI RCSAVHQETV KQKAQIEKDF SFVAQAFKQH CPIVTERPDL
201: EDFMYAYALV GSRAWENSKR ISLIPFADFM NHDGLSASIV LRDEDNQLSE VTADRNYSPG DEVFIKYGEF SNATLMLDFG FTFPYNIHDE VQIQMDVPND
301: DPLRNMKLGL LQTHHTRTVK DINIFHSSCD TFTIKEVKSA IGKGKGIPQS LRAFARVLCC IIPQELNDLS KEAAQNDGRL ARLPFKDGNR ELEAHKILLS
401: HINRLIEDHS VCIKEMEECY FVSQRFAVRR QMARDLLYGE LRVLRSAAEW LNHYCTTLLS ETM

Arabidopsis Description

At3g55080 [Source:UniProtKB/TrEMBL;Acc:Q5PP40]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.