Factsheet for Solyc05g013160.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
vacuole 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid, vacuole
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	vacuole
iPSORT:	plastid
MultiLoc:	plastid
Plant-mPloc:	nucleus, plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400072873	Potato	plastid	98.16	98.16
Solyc05g013150.2.1	Tomato	plastid	78.07	81.76
VIT_01s0182g00050.t01	Wine grape	plastid	70.08	70.66
KRH50559	Soybean	plastid	68.44	68.58
KRG89557	Soybean	plastid	67.83	67.97
CDY36426	Canola	cytosol	9.43	64.79
AT1G14030.1	Thale cress	plastid	62.3	63.07
CDY16126	Canola	plastid	61.68	62.06
GSMUA_Achr7P21060_001	Banana	cytosol	61.27	61.65
Bra026865.1-P	Field mustard	plastid	60.86	61.36
CDY33784	Canola	plastid	60.66	61.16
GSMUA_Achr7P21080_001	Banana	cytosol, plasma membrane, plastid	60.45	56.3
Os09t0411650-01	Rice	plastid	56.76	55.96
Zm00001d020437_P001	Maize	plastid	55.74	55.62
TraesCS5D01G238000.2	Wheat	plastid	55.94	55.15
KXG35611	Sorghum	plastid	55.33	55.1
TraesCS5A01G229500.2	Wheat	plastid	55.53	54.64
TraesCS5B01G228300.1	Wheat	plastid	55.33	54.55
HORVU5Hr1G066350.2	Barley	plastid	55.74	52.82
KRH75058	Soybean	plastid	17.01	50.0
Solyc06g036700.1.1	Tomato	mitochondrion	9.84	23.65
Solyc07g045310.2.1	Tomato	nucleus	20.08	19.56
Solyc02g068050.2.1	Tomato	plastid	14.75	16.74
Solyc06g036670.1.1	Tomato	cytosol	4.92	10.76

Protein Annotations

MapMan:1.2.1.3.1	Gene3D:3.90.1410.10	Gene3D:3.90.1420.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009987
GO:GO:0016279	GO:GO:0016740	GO:GO:0018023	GO:GO:0018026	GO:GO:0019538	GO:GO:0030785
InterPro:IPR001214	InterPro:IPR011192	InterPro:IPR036464	UniProt:K4BY37	PFAM:PF00856	PFAM:PF09273
PIRSF:PIRSF009328	PFscan:PS50280	PFscan:PS51583	PANTHER:PTHR13271	PANTHER:PTHR13271:SF29	InterPro:Rubisco_LSMT_MeTrfase_plant
InterPro:Rubisco_LSMT_subst-bd	InterPro:Rubisco_LSMT_subst-bd_sf	InterPro:SET_dom	SMART:SM00317	SUPFAM:SSF81822	SUPFAM:SSF82199
EnsemblPlantsGene:Solyc05g013160.2	EnsemblPlants:Solyc05g013160.2.1	UniParc:UPI0002765CBD	SEG:seg	:	:

Description

No Description!

Coordinates

chr5:+:6244912..6248098

Molecular Weight (calculated)

55529.3 Da

IEP (calculated)

4.618

GRAVY (calculated)

-0.204

Length

488 amino acids

Sequence
(BLAST)

001: MASVFSLPSS SFLCPLKTTR FRTKIQSLHS SPKSLLINSL QLQELDPNIP EPVQTFWKWL CEEGVVSAKT PVKPGIVPEG LGLVAKRDIA KGETVLEVPR
101: RFWINPDAVA DTEIGNVCTG LKPWISVALF LLREKWRDDS KWKYYMAVLP ESTDSTIYWS EEELSEIQGT QLLSTTLSVK DYVQNEFRKV EEEVILPNKQ
201: LFPFPITLDD FFWAFGMLRS RAFSRLRNQN LILVPFADLT NHNARVTTED HAHEVRGPAG LFSWDLLFSL RSPLKLKAGD QLFIQYDLNK SNADMALDYG
301: FIEPSTSARD AFTLTLEISE SDDFYEDKLD IAESNGLGGT AYFDIKLGQS LPPFLIPYLR LVALSGTDAF LLESIFRNAV WGHLELPVSR ANEELICKVV
401: RDACKSALSA YHTTIEEDEK LMEEGNLSSR LQIALGIRAG EKKVLQQIDD IFRERELELD ELEYYQERRL KDLGLVGEQG DIIFWEPK

Best Arabidopsis Sequence Match ( AT1G14030.1 )
(BLAST)

001: MSASVAVVSG FLRIPSIQKS QNPSFLFSRP KKSLVRPISA SSSELPENVR NFWKWLRDQG VVSGKSVAEP AVVPEGLGLV ARRDIGRNEV VLEIPKRLWI
101: NPETVTASKI GPLCGGLKPW VSVALFLIRE KYEEESSWRV YLDMLPQSTD STVFWSEEEL AELKGTQLLS TTLGVKEYVE NEFLKLEQEI LLPNKDLFSS
201: RITLDDFIWA FGILKSRAFS RLRGQNLVLI PLADLINHNP AIKTEDYAYE IKGAGLFSRD LLFSLKSPVY VKAGEQVYIQ YDLNKSNAEL ALDYGFVESN
301: PKRNSYTLTI EIPESDPFFG DKLDIAESNK MGETGYFDIV DGQTLPAGML QYLRLVALGG PDAFLLESIF NNTIWGHLEL PVSRTNEELI CRVVRDACKS
401: ALSGFDTTIE EDEKLLDKGK LEPRLEMALK IRIGEKRVLQ QIDQIFKDRE LELDILEYYQ ERRLKDLGLV GEQGDIIFWE TK

Arabidopsis Description

LSMT-L[Fructose-bisphosphate aldolase]-lysine N-methyltransferase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9XI84]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.