Factsheet for PGSC0003DMT400072873

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
vacuole 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid, vacuole
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	vacuole
iPSORT:	plastid
MultiLoc:	plastid
Plant-mPloc:	nucleus, plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g013160.2.1	Tomato	plastid	98.16	98.16
PGSC0003DMT400073004	Potato	plastid	81.15	83.19
VIT_01s0182g00050.t01	Wine grape	plastid	70.49	71.07
KRH50559	Soybean	plastid	68.65	68.79
KRG89557	Soybean	plastid	67.83	67.97
CDY36426	Canola	cytosol	9.43	64.79
AT1G14030.1	Thale cress	plastid	62.7	63.49
CDY16126	Canola	plastid	61.89	62.27
GSMUA_Achr7P21060_001	Banana	cytosol	61.27	61.65
Bra026865.1-P	Field mustard	plastid	61.07	61.57
CDY33784	Canola	plastid	60.86	61.36
GSMUA_Achr7P21080_001	Banana	cytosol, plasma membrane, plastid	60.66	56.49
Os09t0411650-01	Rice	plastid	57.17	56.36
Zm00001d020437_P001	Maize	plastid	55.94	55.83
TraesCS5D01G238000.2	Wheat	plastid	56.15	55.35
KXG35611	Sorghum	plastid	55.53	55.31
TraesCS5A01G229500.2	Wheat	plastid	55.74	54.84
TraesCS5B01G228300.1	Wheat	plastid	55.53	54.75
HORVU5Hr1G066350.2	Barley	plastid	55.94	53.01
KRH75058	Soybean	plastid	16.8	49.4
PGSC0003DMT400044855	Potato	plastid	20.49	19.84
PGSC0003DMT400017960	Potato	plastid	17.01	15.81

Protein Annotations

MapMan:1.2.1.3.1	EntrezGene:102587919	Gene3D:3.90.1410.10	Gene3D:3.90.1420.10	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009536	GO:GO:0016740	GO:GO:0030785
GO:GO:0032259	InterPro:IPR001214	InterPro:IPR011192	InterPro:IPR036464	UniProt:M1CR39	PFAM:PF00856
PFAM:PF09273	EnsemblPlantsGene:PGSC0003DMG400028348	PGSC:PGSC0003DMG400028348	EnsemblPlants:PGSC0003DMT400072873	PIRSF:PIRSF009328	PFscan:PS50280
PFscan:PS51583	PANTHER:PTHR13271	PANTHER:PTHR13271:SF29	InterPro:Rubisco_LSMT_MeTrfase_plant	InterPro:Rubisco_LSMT_subst-bd	InterPro:Rubisco_LSMT_subst-bd_sf
InterPro:SET_dom	SMART:SM00317	SUPFAM:SSF81822	SUPFAM:SSF82199	UniParc:UPI000295C64F	RefSeq:XP_006348754.1
SEG:seg	:	:	:	:	:

Description

Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic [Source:PGSC_GENE;Acc:PGSC0003DMG400028348]

Coordinates

chr5:-:63123..67842

Molecular Weight (calculated)

55622.4 Da

IEP (calculated)

4.652

GRAVY (calculated)

-0.217

Length

488 amino acids

Sequence
(BLAST)

001: MASVFSLPSS SFLCPLKTTR FRTKFQSLHS SPKPFLINSL QLKELDPNIP EPVQTFWKWL CDEGVVSAKT PVKPGIVPEG LGLVAKRDIA KGETVLEVPR
101: RFWINPDAVA DTEIGNVCTG LKPWISVALF LLREKWRDDS KWKYYMAVLP ESTDSTIYWS EEELSEIQGT QLLSTTLSVK DYVQNEFQKV EEEVILPNKQ
201: LFPFPITLDD FFWAFGMLRS RAFSRLRNQN LILVPFADLT NHNARVTTED HAHEVRGPAG LFSWDLLFSL RSPLKLKAGD QLFIQYDLNK SNADMALDYG
301: FIEPSTSARD AFTLTLEISE SDDFYEDKLD IAESNGLGET AYFDIKLGQS LPPFLIPYLR LVALSGTDAF LLESIFRNAV WGHLELPVSR ANEELICKVV
401: RDACKSALSA YHTTIEEDEK LMEKGNLSSR LQIAVGIRAG EKKVLQQIDD IFRERELELD ELEYYQERRL KDLGLVGEQG DIIFWEPK

Best Arabidopsis Sequence Match ( AT1G14030.1 )
(BLAST)

001: MSASVAVVSG FLRIPSIQKS QNPSFLFSRP KKSLVRPISA SSSELPENVR NFWKWLRDQG VVSGKSVAEP AVVPEGLGLV ARRDIGRNEV VLEIPKRLWI
101: NPETVTASKI GPLCGGLKPW VSVALFLIRE KYEEESSWRV YLDMLPQSTD STVFWSEEEL AELKGTQLLS TTLGVKEYVE NEFLKLEQEI LLPNKDLFSS
201: RITLDDFIWA FGILKSRAFS RLRGQNLVLI PLADLINHNP AIKTEDYAYE IKGAGLFSRD LLFSLKSPVY VKAGEQVYIQ YDLNKSNAEL ALDYGFVESN
301: PKRNSYTLTI EIPESDPFFG DKLDIAESNK MGETGYFDIV DGQTLPAGML QYLRLVALGG PDAFLLESIF NNTIWGHLEL PVSRTNEELI CRVVRDACKS
401: ALSGFDTTIE EDEKLLDKGK LEPRLEMALK IRIGEKRVLQ QIDQIFKDRE LELDILEYYQ ERRLKDLGLV GEQGDIIFWE TK

Arabidopsis Description

LSMT-L[Fructose-bisphosphate aldolase]-lysine N-methyltransferase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9XI84]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.