Factsheet for PGSC0003DMT400017960

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 9

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400007592
PGSC0003DMT400075155

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G14260.1	PGSC0003DMT400007592	AT1G19180.1	21798944
AT5G14260.1	PGSC0003DMT400075155	AT1G19180.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g068050.2.1	Tomato	plastid	77.9	95.12
CDX91073	Canola	mitochondrion, nucleus, plastid	61.33	75.06
VIT_14s0171g00310.t01	Wine grape	plastid	72.0	74.26
Zm00001d044101_P002	Maize	cytosol	54.1	74.15
AT5G14260.1	Thale cress	plastid	70.48	71.98
KRG94324	Soybean	plastid	68.57	71.71
KRH57642	Soybean	plastid	67.81	70.78
Bra008769.1-P	Field mustard	plastid	69.14	70.35
Bra023454.1-P	Field mustard	plastid	67.62	70.3
GSMUA_Achr3P16970_001	Banana	plastid	66.1	68.17
CDX85607	Canola	plastid	47.81	67.66
TraesCS5D01G123700.2	Wheat	plastid	61.14	64.07
TraesCS5A01G106100.1	Wheat	golgi	60.95	63.87
Os12t0236900-01	Rice	plastid	60.38	62.28
EES01150	Sorghum	plastid	60.57	62.11
CDX85606	Canola	cytosol	12.0	61.76
HORVU5Hr1G033180.3	Barley	mitochondrion	60.57	60.0
TraesCS5B01G110900.1	Wheat	plastid	61.14	59.89
Zm00001d011448_P002	Maize	plastid	60.0	58.33
CDX69594	Canola	cytosol	68.95	39.48
CDY57896	Canola	cytosol	68.57	39.26
PGSC0003DMT400044855	Potato	plastid	21.52	22.42
PGSC0003DMT400073004	Potato	plastid	16.0	17.65
PGSC0003DMT400072873	Potato	plastid	15.81	17.01

Protein Annotations

Gene3D:3.90.1410.10	Gene3D:3.90.1420.10	MapMan:35.2	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	InterPro:IPR036464	UniProt:M1A9T7
PFAM:PF09273	EnsemblPlantsGene:PGSC0003DMG400006974	PGSC:PGSC0003DMG400006974	EnsemblPlants:PGSC0003DMT400017960	PANTHER:PTHR13271	PANTHER:PTHR13271:SF9
InterPro:Rubisco_LSMT_subst-bd	InterPro:Rubisco_LSMT_subst-bd_sf	SUPFAM:SSF81822	SUPFAM:SSF82199	UniParc:UPI00029483BC	SEG:seg

Description

SET domain-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400006974]

Coordinates

chr2:-:26719764..26723210

Molecular Weight (calculated)

58785.8 Da

IEP (calculated)

6.198

GRAVY (calculated)

-0.168

Length

525 amino acids

Sequence
(BLAST)

001: MDLVYSPMAK CISAPFPSFT HRPLALFSRV SISPKYANAR RLWKMCSASS SDTLVDNGPV KEVRKSLEVA SKKEDEYGDL KSWMHQNGLP PCKVVIKDRP
101: SHDAKHLPIH YVAASEDLQA GDIAFAVPDS LVVTLERVLG NETIAELLTT NKLSELACLA LYLMYEKKQG KKSFWYPYIR ELDRQRARGQ LSVESPLLWS
201: DAELDYLTGS PTKAEVLERA EGIKREYNEL DTVWFMAGSL FQQYPYDIPT EAFPFEIFKQ AFVAVQSCVV HLQKVSLARR FALVPLGPPL LSYCSNCKAM
301: LAAVNGAVQL VVDRSYSVGD PIVVWCGPQP NSKLLINYGF VDEENSYDRL MVEAALNTED PQYQDKRLAA QRNGKLSVQA FQVCVGKERE AVLEMLPYLR
401: LGYVSDPSEM QTVLSSQGPI CPVKSPGFCK LLDYGYMSPC MERAVLDQLS DYFRARLACY PTTLSEDEAL LSDADLDPKK RVATQLVRLE KKILNACLET
501: TVNFINQLPD HSVSPCPAPF APTLK

Best Arabidopsis Sequence Match ( AT5G14260.2 )
(BLAST)

001: MEGVITCFHT KCVSLPIRSF PLSRVSSLPR WRNNKLISSS RSVHLRSLCV SSSDTLVASG SPKEDERQSK VSSKKEGDDS EDLKFWMDKN GLPPCKVILK
101: ERPAHDQKHK PIHYVAASED LQKGDVAFSV PDSLVVTLER VLGNETIAEL LTTNKLSELA CLALYLMYEK KQGKKSVWYP YIRELDRQRG RGQLDAESPL
201: LWSEAELDYL TGSPTKAEVL ERAEGIKREY NELDTVWFMA GSLFQQYPFD IPTEAFSFEI FKQAFVAIQS CVVHLQNVGL ARRFALVPLG PPLLAYCSNC
301: KAMLTAVDGA VELVVDRPYK AGDPIVVWCG PQPNAKLLLN YGFVDEDNPY DRVIVEAALN TEDPQYQDKR MVAQRNGKLS QQVFQVRVGK EREAVQDMLP
401: YLRLGYMSDP SEMQSVISSQ GPVCPMSPCM ERAVLDQLAN YFMRRLSGYP TTPKEDDALL ADPSLSPRKR VATRLVQLEK KILVACLTTT VDLLNQLPDT
501: AISPCPAPYA PSLK

Arabidopsis Description

Rubisco methyltransferase family protein [Source:UniProtKB/TrEMBL;Acc:Q8VZB5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.