Factsheet for Zm00001d011448_P002

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 20089766
plastid: 22065420
plastid: 23198870

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d005813_P002
Zm00001d006860_P001
Zm00001d020614_P001
Zm00001d022139_P001
Zm00001d029448_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G14260.1	Zm00001d005813_P002	AT1G19180.1	21798944
AT5G14260.1	Zm00001d006860_P001	AT1G19180.1	21798944
AT5G14260.1	Zm00001d020614_P001	AT1G19180.1	21798944
AT5G14260.1	Zm00001d022139_P001	AT1G19180.1	21798944
AT5G14260.1	Zm00001d029448_P001	AT1G19180.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d044101_P002	Maize	cytosol	66.48	93.73
EES01150	Sorghum	plastid	88.33	93.16
TraesCS5D01G123700.2	Wheat	plastid	75.37	81.24
TraesCS5A01G106100.1	Wheat	golgi	75.19	81.04
Os12t0236900-01	Rice	plastid	75.93	80.55
HORVU5Hr1G033180.3	Barley	mitochondrion	74.26	75.66
TraesCS5B01G110900.1	Wheat	plastid	75.0	75.56
CDX91073	Canola	mitochondrion, nucleus, plastid	54.81	69.0
GSMUA_Achr3P16970_001	Banana	plastid	61.48	65.23
VIT_14s0171g00310.t01	Wine grape	plastid	60.37	64.05
KRG94324	Soybean	plastid	59.44	63.94
KRH57642	Soybean	plastid	59.44	63.82
CDX85607	Canola	plastid	43.15	62.8
Bra023454.1-P	Field mustard	plastid	58.7	62.77
AT5G14260.1	Thale cress	plastid	59.07	62.06
Bra008769.1-P	Field mustard	plastid	59.07	61.82
CDX85606	Canola	cytosol	11.67	61.76
PGSC0003DMT400017960	Potato	plastid	58.33	60.0
Solyc02g068050.2.1	Tomato	plastid	47.41	59.53
CDX69594	Canola	cytosol	58.7	34.57
CDY57896	Canola	cytosol	58.52	34.46
Zm00001d020437_P001	Maize	plastid	20.56	22.7
Zm00001d051668_P001	Maize	plastid	21.11	22.66
Zm00001d051669_P002	Maize	plastid	20.93	22.11
Zm00001d034120_P001	Maize	cytosol	3.33	15.79

Protein Annotations

Gene3D:3.90.1410.10	Gene3D:3.90.1420.10	MapMan:35.2	UniProt:A0A1D6G0C7	ProteinID:AQK96937.1	ProteinID:AQK96940.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0016740
GO:GO:0032259	InterPro:IPR036464	PFAM:PF09273	PANTHER:PTHR13271	PANTHER:PTHR13271:SF9	InterPro:Rubisco_LSMT_subst-bd
InterPro:Rubisco_LSMT_subst-bd_sf	SUPFAM:SSF81822	SUPFAM:SSF82199	UniParc:UPI0008429732	EnsemblPlantsGene:Zm00001d011448	EnsemblPlants:Zm00001d011448_P002
EnsemblPlants:Zm00001d011448_T002	SEG:seg	:	:	:	:

Description

Rubisco methyltransferase family protein

Coordinates

chr8:+:150835820..150848273

Molecular Weight (calculated)

60441.7 Da

IEP (calculated)

5.306

GRAVY (calculated)

-0.230

Length

540 amino acids

Sequence
(BLAST)

001: MASVSPAAAA AAVSGSHHGR LLLPSSPRRL PRPRPRLRFA SCHADTLLPS SSSEVRTPLV PAVEPSSESS TDCFVDWLRA RGLPPGKVDI RERPVPCLRD
101: GKDRPLRYVA AGVDLQEGDV AFEVPMSLVV TLERVLGDES IAELLTNNKL SELACLALYL MYEKKQGKDS FWYPYIKELD RHRGRGQLAV ESPLLWTESE
201: LDYLSGSPLK DEVVARDEAI RREYNELDTL WFMAGSLFQQ YPFDIPTEAF PFEIFKQAFV AVQSCVVHLQ CLIGRCKLMH CCHCKSTEML LIDSVMLLIQ
301: EQKVSLARRF ALVPLGPPLL TYKSNCKAML TVDGESVRLV VDRPYKAGEP IIIWCGPQTN SRLVLNYGFV DENNPFDRIS IEASLNTEDP QYQEKRMVAQ
401: RNGKHAIQNF NVYVGKEKQT VAEMLPYLRL GYISDPDEMQ SILSSEGDTC PVSPCTERAV LDQLGGYLES RLAGYPTTLN EDEAMLADGS LEPKQEVATR
501: LVRLEKKMLH ACLQATNEFI TDLPDHTVSP CPAQYAPEMK

Best Arabidopsis Sequence Match ( AT5G14260.2 )
(BLAST)

001: MEGVITCFHT KCVSLPIRSF PLSRVSSLPR WRNNKLISSS RSVHLRSLCV SSSDTLVASG SPKEDERQSK VSSKKEGDDS EDLKFWMDKN GLPPCKVILK
101: ERPAHDQKHK PIHYVAASED LQKGDVAFSV PDSLVVTLER VLGNETIAEL LTTNKLSELA CLALYLMYEK KQGKKSVWYP YIRELDRQRG RGQLDAESPL
201: LWSEAELDYL TGSPTKAEVL ERAEGIKREY NELDTVWFMA GSLFQQYPFD IPTEAFSFEI FKQAFVAIQS CVVHLQNVGL ARRFALVPLG PPLLAYCSNC
301: KAMLTAVDGA VELVVDRPYK AGDPIVVWCG PQPNAKLLLN YGFVDEDNPY DRVIVEAALN TEDPQYQDKR MVAQRNGKLS QQVFQVRVGK EREAVQDMLP
401: YLRLGYMSDP SEMQSVISSQ GPVCPMSPCM ERAVLDQLAN YFMRRLSGYP TTPKEDDALL ADPSLSPRKR VATRLVQLEK KILVACLTTT VDLLNQLPDT
501: AISPCPAPYA PSLK

Arabidopsis Description

Rubisco methyltransferase family protein [Source:UniProtKB/TrEMBL;Acc:Q8VZB5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.