Factsheet for Bra023454.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra025713.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G14260.1	Bra025713.1-P	AT1G19180.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX91073	Canola	mitochondrion, nucleus, plastid	77.82	91.61
Bra008769.1-P	Field mustard	plastid	86.34	84.5
AT5G14260.1	Thale cress	plastid	85.35	83.85
CDX85606	Canola	cytosol	16.83	83.33
CDX85607	Canola	plastid	60.0	81.67
Zm00001d044101_P002	Maize	cytosol	56.44	74.41
VIT_14s0171g00310.t01	Wine grape	plastid	72.87	72.3
KRH57642	Soybean	plastid	70.89	71.17
KRG94324	Soybean	plastid	70.5	70.92
GSMUA_Achr3P16970_001	Banana	plastid	69.9	69.35
Solyc02g068050.2.1	Tomato	plastid	58.42	68.6
PGSC0003DMT400017960	Potato	plastid	70.3	67.62
TraesCS5D01G123700.2	Wheat	plastid	63.17	63.67
TraesCS5A01G106100.1	Wheat	golgi	62.97	63.47
EES01150	Sorghum	plastid	64.16	63.28
Os12t0236900-01	Rice	plastid	62.97	62.48
HORVU5Hr1G033180.3	Barley	mitochondrion	62.77	59.81
TraesCS5B01G110900.1	Wheat	plastid	62.97	59.33
Zm00001d011448_P002	Maize	plastid	62.77	58.7
Bra040022.1-P	Field mustard	plastid	24.75	24.65
Bra026865.1-P	Field mustard	plastid	19.01	19.83
Bra007135.1-P	Field mustard	cytosol, mitochondrion, plastid	12.48	19.27
Bra007140.1-P	Field mustard	mitochondrion	16.44	18.61
Bra028018.1-P	Field mustard	cytosol	4.55	16.08
Bra040023.1-P	Field mustard	endoplasmic reticulum	4.95	12.02
Bra029668.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	4.55	11.06

Protein Annotations

EnsemblPlants:Bra023454.1	EnsemblPlants:Bra023454.1-P	EnsemblPlantsGene:Bra023454	Gene3D:3.90.1410.10	Gene3D:3.90.1420.10	InterPro:IPR036464
InterPro:Rubisco_LSMT_subst-bd	InterPro:Rubisco_LSMT_subst-bd_sf	PANTHER:PTHR13271	PANTHER:PTHR13271:SF9	PFAM:PF09273	SUPFAM:SSF81822
SUPFAM:SSF82199	UniParc:UPI000254355D	UniProt:M4E3V1	MapMan:35.2	:	:

Description

AT5G14260 (E=3e-264) | SET domain-containing protein

Coordinates

chrA02:+:3433233..3435599

Molecular Weight (calculated)

56639.3 Da

IEP (calculated)

6.384

GRAVY (calculated)

-0.246

Length

505 amino acids

Sequence
(BLAST)

001: MEGVITCFHT KCVSLPARPI PLSRWRNRNL VSSIPRRSLC VSASSSDTLL AGGSPKEDER QSKVSSKGDD SEDLKLWMDK KGLPPCKILL KERPAHDQNH
101: KPIHYVAASE DLQKGDVAFS VPNSLVVTLE RVLGNETIAE LLTTNKLSEL ACLALYLMYE KKQGKKSVWY PYIRELDRQR GRGQLDVESP LLWSEAELEY
201: LTGSPTKAEV LERAEGIKRE YSELDTVWFM AGSLFQQYPF DIPTEAFSFE IFKQAFVAIQ SCVVHLQNVS LARRFALVPL GPPLLAYCSN CKAMLTAVDD
301: AVELVVDRAY KAGDPIVAWC GPQPNAKLLL NYGFVDEDNP YDRIIVEAAL STDDPQYQDK RLVAQRNGKL SQQVFQVRVG KEREAVQDML PYLRLGYMSD
401: PAEMQSVISS QGPVCSMSPC MERAVLDQLA DYFMRRLSRY PTTLKEDDAM LADPSLNPRK RVATRLVRLE KKMLAACLVA TVDFLNELPD TSISPCPALY
501: APSLK

Best Arabidopsis Sequence Match ( AT5G14260.2 )
(BLAST)

001: MEGVITCFHT KCVSLPIRSF PLSRVSSLPR WRNNKLISSS RSVHLRSLCV SSSDTLVASG SPKEDERQSK VSSKKEGDDS EDLKFWMDKN GLPPCKVILK
101: ERPAHDQKHK PIHYVAASED LQKGDVAFSV PDSLVVTLER VLGNETIAEL LTTNKLSELA CLALYLMYEK KQGKKSVWYP YIRELDRQRG RGQLDAESPL
201: LWSEAELDYL TGSPTKAEVL ERAEGIKREY NELDTVWFMA GSLFQQYPFD IPTEAFSFEI FKQAFVAIQS CVVHLQNVGL ARRFALVPLG PPLLAYCSNC
301: KAMLTAVDGA VELVVDRPYK AGDPIVVWCG PQPNAKLLLN YGFVDEDNPY DRVIVEAALN TEDPQYQDKR MVAQRNGKLS QQVFQVRVGK EREAVQDMLP
401: YLRLGYMSDP SEMQSVISSQ GPVCPMSPCM ERAVLDQLAN YFMRRLSGYP TTPKEDDALL ADPSLSPRKR VATRLVQLEK KILVACLTTT VDLLNQLPDT
501: AISPCPAPYA PSLK

Arabidopsis Description

Rubisco methyltransferase family protein [Source:UniProtKB/TrEMBL;Acc:Q8VZB5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.