Factsheet for VIT_14s0171g00310.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_11s0016g00710.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G14260.1	VIT_11s0016g00710.t01	AT1G19180.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d044101_P002	Maize	cytosol	59.33	78.85
CDX91073	Canola	mitochondrion, nucleus, plastid	66.4	78.79
KRH57642	Soybean	plastid	73.48	74.35
KRG94324	Soybean	plastid	72.1	73.11
Bra023454.1-P	Field mustard	plastid	72.3	72.87
AT5G14260.1	Thale cress	plastid	73.48	72.76
GSMUA_Achr3P16970_001	Banana	plastid	72.5	72.5
Solyc02g068050.2.1	Tomato	plastid	61.1	72.33
PGSC0003DMT400017960	Potato	plastid	74.26	72.0
Bra008769.1-P	Field mustard	plastid	72.5	71.51
CDX85607	Canola	plastid	50.49	69.27
TraesCS5D01G123700.2	Wheat	plastid	65.03	66.07
TraesCS5A01G106100.1	Wheat	golgi	64.64	65.67
EES01150	Sorghum	plastid	65.23	64.84
Os12t0236900-01	Rice	plastid	64.83	64.83
CDX85606	Canola	cytosol	12.97	64.71
HORVU5Hr1G033180.3	Barley	mitochondrion	64.24	61.7
TraesCS5B01G110900.1	Wheat	plastid	64.83	61.57
Zm00001d011448_P002	Maize	plastid	64.05	60.37
CDX69594	Canola	cytosol	73.67	40.89
CDY57896	Canola	cytosol	73.48	40.79
VIT_12s0057g01250.t01	Wine grape	plastid	21.81	22.33
VIT_01s0182g00050.t01	Wine grape	plastid	19.06	20.04
VIT_13s0067g03620.t01	Wine grape	cytosol	15.91	18.0

Protein Annotations

EntrezGene:100255895	wikigene:100255895	Gene3D:3.90.1410.10	Gene3D:3.90.1420.10	MapMan:35.2	ProteinID:CCB62229
ProteinID:CCB62229.1	UniProt:F6I5L1	EMBL:FN596749	GO:GO:0003674	GO:GO:0003824	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016279	GO:GO:0016740	GO:GO:0018026
GO:GO:0019538	InterPro:IPR036464	EntrezGene:LOC100255895	wikigene:LOC100255895	PFAM:PF09273	PANTHER:PTHR13271
PANTHER:PTHR13271:SF9	InterPro:Rubisco_LSMT_subst-bd	InterPro:Rubisco_LSMT_subst-bd_sf	SUPFAM:SSF81822	SUPFAM:SSF82199	UniParc:UPI00015C97A4
ArrayExpress:VIT_14s0171g00310	EnsemblPlantsGene:VIT_14s0171g00310	EnsemblPlants:VIT_14s0171g00310.t01	unigene:Vvi.11927	RefSeq:XP_002264334	RefSeq:XP_002264334.1
RefSeq:XP_003633789	RefSeq:XP_003633789.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr14:+:26134486..26140313

Molecular Weight (calculated)

56985.7 Da

IEP (calculated)

7.410

GRAVY (calculated)

-0.228

Length

509 amino acids

Sequence
(BLAST)

001: MDVAHLSTKC FLSPIPSSSL PVLSRIPISL RRSRRAASLR RIRLCSASGS DTLVAGSRKE DGRVSEAARK KEDEFGDLKS WMHENGLPPC KVVLKERPSH
101: HEQHKAIHYI AASEDLQAGD VAFSVPDSLV VTLERVLGNE TIAELLTTNK LSELACLALY LMYEKKQGKK SFWYPYIREL DRQRGRGQLA VESPLLWSES
201: ELAYLTGSPT KAEVLERAEG IKREYNELDT VWFMAGSLFQ QYPYDIPTEA FPFEIFKQAF VAIQSCVVHL QKVSLARRFA LVPLGPPLLA YRSNCKAMLA
301: AVDGSVQLVV DRPYKAGESI VVWCGPQPNS KLLLNYGFVD EDNSYDRIVV EAALNTEDPQ YQDKRMVAQR NGKLTVQKFH VSVGKEREAV SDMLPYLRLG
401: YVSDPSEMQS VISSQGPICP VSPCMERAVL DQLVDYFERR LAGYPTTMSE DECLLADSNL NPKKLVATQL VRLEKKMLNA CLKATVDLIN QLPDHTVSPC
501: PAPYTPLLK

Best Arabidopsis Sequence Match ( AT5G14260.2 )
(BLAST)

001: MEGVITCFHT KCVSLPIRSF PLSRVSSLPR WRNNKLISSS RSVHLRSLCV SSSDTLVASG SPKEDERQSK VSSKKEGDDS EDLKFWMDKN GLPPCKVILK
101: ERPAHDQKHK PIHYVAASED LQKGDVAFSV PDSLVVTLER VLGNETIAEL LTTNKLSELA CLALYLMYEK KQGKKSVWYP YIRELDRQRG RGQLDAESPL
201: LWSEAELDYL TGSPTKAEVL ERAEGIKREY NELDTVWFMA GSLFQQYPFD IPTEAFSFEI FKQAFVAIQS CVVHLQNVGL ARRFALVPLG PPLLAYCSNC
301: KAMLTAVDGA VELVVDRPYK AGDPIVVWCG PQPNAKLLLN YGFVDEDNPY DRVIVEAALN TEDPQYQDKR MVAQRNGKLS QQVFQVRVGK EREAVQDMLP
401: YLRLGYMSDP SEMQSVISSQ GPVCPMSPCM ERAVLDQLAN YFMRRLSGYP TTPKEDDALL ADPSLSPRKR VATRLVQLEK KILVACLTTT VDLLNQLPDT
501: AISPCPAPYA PSLK

Arabidopsis Description

Rubisco methyltransferase family protein [Source:UniProtKB/TrEMBL;Acc:Q8VZB5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.