Factsheet for VIT_13s0067g03620.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
plastid 1
peroxisome 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, peroxisome, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	peroxisome
PTS1:	peroxisome
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH36235	Soybean	mitochondrion	59.78	58.86
CDX93745	Canola	cytosol	19.11	53.75
AT3G55080.1	Thale cress	mitochondrion	55.11	53.56
CDY40197	Canola	cytosol	19.33	51.18
Bra007140.1-P	Field mustard	mitochondrion	49.33	49.78
CDY40200	Canola	mitochondrion	51.33	49.46
CDX73405	Canola	mitochondrion	32.67	47.57
GSMUA_Achr11P...	Banana	mitochondrion	52.0	45.7
TraesCS3D01G544800.2	Wheat	mitochondrion	45.78	45.27
Solyc06g036700.1.1	Tomato	mitochondrion	20.22	44.83
TraesCS3A01G539300.2	Wheat	mitochondrion	45.33	43.87
Os01t0976450-00	Rice	mitochondrion	36.44	42.82
Bra007135.1-P	Field mustard	cytosol, mitochondrion, plastid	28.44	39.14
Bra028018.1-P	Field mustard	cytosol	10.22	32.17
VIT_01s0182g00050.t01	Wine grape	plastid	22.67	21.07
VIT_12s0057g01250.t01	Wine grape	plastid	21.56	19.52
VIT_14s0171g00310.t01	Wine grape	plastid	18.0	15.91
TraesCS3B01G605100.1	Wheat	mitochondrion	33.56	12.11

Protein Annotations

EntrezGene:100263808	wikigene:100263808	Gene3D:3.90.1410.10	Gene3D:3.90.1420.10	MapMan:35.1	ProteinID:CCB49759
ProteinID:CCB49759.1	UniProt:F6HC21	EMBL:FN595514	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016279
GO:GO:0016740	GO:GO:0018026	GO:GO:0019538	InterPro:IPR001214	InterPro:IPR036464	EntrezGene:LOC100263808
wikigene:LOC100263808	PFAM:PF00856	PFAM:PF09273	PANTHER:PTHR13271	PANTHER:PTHR13271:SF11	InterPro:Rubisco_LSMT_subst-bd
InterPro:Rubisco_LSMT_subst-bd_sf	InterPro:SET_dom	SUPFAM:SSF81822	SUPFAM:SSF82199	UniParc:UPI0002109E02	ArrayExpress:VIT_13s0067g03620
EnsemblPlantsGene:VIT_13s0067g03620	EnsemblPlants:VIT_13s0067g03620.t01	unigene:Vvi.22375	RefSeq:XP_002275729	RefSeq:XP_002275729.1	SEG:seg

Description

No Description!

Coordinates

chr13:-:2012859..2036924

Molecular Weight (calculated)

50371.3 Da

IEP (calculated)

7.079

GRAVY (calculated)

-0.236

Length

450 amino acids

Sequence
(BLAST)

001: MPQDSHCVDK DCDDFLPWLE QKAGVEISSV LSIGKSTYGR SLFASKSIQT GDCILKVPYN VQISPDNVPS KINSLLGDEV GNIAKLAIVI SVEWKMGQDS
101: EWAPYINRLP QPGEMHSTIF WSEGELKMIQ QSSVYQETIN QKAQIQKDFL AIKPVLHHFS ENLFKDISLK EFMHACALVG SRAWGSTKGL SLIPFADFVN
201: HDGFSDSVLL GDEDKQLSEV IADRNYAPGE QVLIRYGKFP NATLLLDFGF TLPYNIYDQV QIQVNIPHHD LLRTLKLELL HRHCPPKIGD VNSFSSMGNS
301: FTIKEVKSAR GKGRGIPQSL RAFARIFCCT SPQELSDLAV EAAQNDGRLA RRPLKSWNRE IQAHQVLLSW ITRLINEYNT SIKSLPLASP LYETFALRKQ
401: MARDLLTGEL RVLKSAGAWL ENYCATLTTK SYLSDENGGS ETVLGSRAKF

Best Arabidopsis Sequence Match ( AT3G55080.1 )
(BLAST)

001: MLFCISTVKL FGFQQRRNVS SLAKRFSLAG KLTLELQTQA SLDNNFLPWL ERIAGAKITN TLSIGKSTYG RSLFASKVIY AGDCMLKVPF NAQITPDELP
101: SDIRVLLSNE VGNIGMLAAV LIREKKMGQK SRWVPYISRL PQPAEMHSSI FWGEDELSMI RCSAVHQETV KQKAQIEKDF SFVAQAFKQH CPIVTERPDL
201: EDFMYAYALV GSRAWENSKR ISLIPFADFM NHDGLSASIV LRDEDNQLSE VTADRNYSPG DEVFIKYGEF SNATLMLDFG FTFPYNIHDE VQIQMDVPND
301: DPLRNMKLGL LQTHHTRTVK DINIFHSSCD TFTIKEVKSA IGKGKGIPQS LRAFARVLCC IIPQELNDLS KEAAQNDGRL ARLPFKDGNR ELEAHKILLS
401: HINRLIEDHS VCIKEMEECY FVSQRFAVRR QMARDLLYGE LRVLRSAAEW LNHYCTTLLS ETM

Arabidopsis Description

At3g55080 [Source:UniProtKB/TrEMBL;Acc:Q5PP40]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.