CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra007140.1-P	Field mustard	mitochondrion	91.43	95.74
CDY40197	Canola	cytosol	32.76	90.0
CDX93745	Canola	cytosol	29.76	86.88
CDX73405	Canola	mitochondrion	56.75	85.76
AT3G55080.1	Thale cress	mitochondrion	75.16	75.81
VIT_13s0067g03620.t01	Wine grape	cytosol	49.46	51.33
KRH36235	Soybean	mitochondrion	46.68	47.7
TraesCS3D01G544800.2	Wheat	mitochondrion	39.83	40.88
TraesCS3A01G539300.2	Wheat	mitochondrion	38.54	38.71
GSMUA_Achr11P...	Banana	mitochondrion	41.76	38.09
Solyc06g036700.1.1	Tomato	mitochondrion	16.06	36.95
Os01t0976450-00	Rice	mitochondrion	28.69	34.99
CDY22127	Canola	plastid	21.63	19.92
CDX91073	Canola	mitochondrion, nucleus, plastid	17.13	18.65
CDY33784	Canola	plastid	19.06	18.39
CDY16126	Canola	plastid	18.63	17.94
CDX85607	Canola	plastid	14.13	17.79
CDX85606	Canola	cytosol	3.0	13.73
CDY07978	Canola	endoplasmic reticulum	5.78	12.92
CDX74033	Canola	endoplasmic reticulum	5.57	12.5
TraesCS3B01G605100.1	Wheat	mitochondrion	28.91	10.83
CDY36426	Canola	cytosol	1.5	9.86
CDX69594	Canola	cytosol	18.84	9.6
CDY57896	Canola	cytosol	18.84	9.6

Protein Annotations

EnsemblPlants:CDY40200	EnsemblPlantsGene:GSBRNA2T00069342001	Gene3D:3.90.1410.10	Gene3D:3.90.1420.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR001214	InterPro:IPR036464	InterPro:Rubisco_LSMT_subst-bd	InterPro:Rubisco_LSMT_subst-bd_sf	InterPro:SET_dom
PANTHER:PTHR13271	PANTHER:PTHR13271:SF11	PFAM:PF00856	PFAM:PF09273	ProteinID:CDY40200	ProteinID:CDY40200.1
SUPFAM:SSF82199	UniParc:UPI0004EEC886	UniProt:A0A078HNS6	MapMan:35.1	:	:

Description

BnaA09g34820DBnaA09g34820D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HNS6]

Coordinates

chrLK032466:-:7611..12673

Molecular Weight (calculated)

52843.3 Da

IEP (calculated)

7.311

GRAVY (calculated)

-0.203

Length

467 amino acids

Sequence
(BLAST)

001: MLLSCPTVKL IVFQQRRTFT SSLAKRFSFN AQSLTESQAQ AALDKDCIDF LPWLEQIAGA KLTNSLSIGK SPYGSRALFA SKVIHAGDCI LKIPFNAQIT
101: PDELPTDIRV SLTDKVGNIG KLAALVMIEI NAGQNSRWFP YISRLPQLSD MHSTIFWDEN EFSMIRCSAV YKETVKQKAR IEKEFSLVSQ AFKKHLPKAI
201: ERPALENFMY AYTLVGSRAW ETSRGISLIP FADFMNHDGL SASIVLTDED NQLSEVTADR DYSPGDEVLI RYGEFSNATL MLDFGFTFPY NTHDEVQIQM
301: DIANDDPLRN MKLGLLQTHY TRSVKDINIF HSSYDTFTIK EVKSATGKGI PQSLRAFARL LSCTSPQELN DLSKEAEQND GRLARLPFKD RSREVEAHKI
401: ILAHINSLIV DHSVCIKELG ASNFRFESQR LTVRRQMARE LIFGELRVLR SAAEWLIHYC TNLFSAP

Best Arabidopsis Sequence Match ( AT3G55080.1 )
(BLAST)

001: MLFCISTVKL FGFQQRRNVS SLAKRFSLAG KLTLELQTQA SLDNNFLPWL ERIAGAKITN TLSIGKSTYG RSLFASKVIY AGDCMLKVPF NAQITPDELP
101: SDIRVLLSNE VGNIGMLAAV LIREKKMGQK SRWVPYISRL PQPAEMHSSI FWGEDELSMI RCSAVHQETV KQKAQIEKDF SFVAQAFKQH CPIVTERPDL
201: EDFMYAYALV GSRAWENSKR ISLIPFADFM NHDGLSASIV LRDEDNQLSE VTADRNYSPG DEVFIKYGEF SNATLMLDFG FTFPYNIHDE VQIQMDVPND
301: DPLRNMKLGL LQTHHTRTVK DINIFHSSCD TFTIKEVKSA IGKGKGIPQS LRAFARVLCC IIPQELNDLS KEAAQNDGRL ARLPFKDGNR ELEAHKILLS
401: HINRLIEDHS VCIKEMEECY FVSQRFAVRR QMARDLLYGE LRVLRSAAEW LNHYCTTLLS ETM

Arabidopsis Description

At3g55080 [Source:UniProtKB/TrEMBL;Acc:Q5PP40]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.