CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY26697
CDY41023

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G14260.1	CDY26697	AT1G19180.1	21798944
AT5G14260.1	CDY41023	AT1G19180.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX91073	Canola	mitochondrion, nucleus, plastid	72.51	62.7
Bra023454.1-P	Field mustard	plastid	81.67	60.0
Solyc02g068050.2.1	Tomato	plastid	67.12	57.91
AT5G14260.1	Thale cress	plastid	77.9	56.23
Zm00001d044101_P002	Maize	cytosol	54.72	53.0
VIT_14s0171g00310.t01	Wine grape	plastid	69.27	50.49
KRH57642	Soybean	plastid	67.12	49.5
GSMUA_Achr3P16970_001	Banana	plastid	67.66	49.31
KRG94324	Soybean	plastid	65.77	48.61
PGSC0003DMT400017960	Potato	plastid	67.66	47.81
TraesCS5D01G123700.2	Wheat	plastid	64.15	47.51
TraesCS5A01G106100.1	Wheat	golgi	64.15	47.51
Os12t0236900-01	Rice	plastid	64.15	46.76
EES01150	Sorghum	plastid	64.15	46.48
HORVU5Hr1G033180.3	Barley	mitochondrion	63.88	44.72
TraesCS5B01G110900.1	Wheat	plastid	63.88	44.22
Zm00001d011448_P002	Maize	plastid	62.8	43.15
CDY57896	Canola	cytosol	75.47	30.53
CDX69594	Canola	cytosol	75.2	30.43
CDX93745	Canola	cytosol	9.43	21.88
CDX73405	Canola	mitochondrion	16.17	19.42
CDY22127	Canola	plastid	25.88	18.93
CDY16126	Canola	plastid	19.41	14.85
CDY33784	Canola	plastid	18.6	14.26
CDY40200	Canola	mitochondrion	17.79	14.13
CDX74033	Canola	endoplasmic reticulum	4.58	8.17
CDY07978	Canola	endoplasmic reticulum	4.58	8.13
CDY40197	Canola	cytosol	3.23	7.06
CDX85606	Canola	cytosol	0.54	1.96
CDY36426	Canola	cytosol	0.27	1.41

Protein Annotations

EnsemblPlants:CDX85607	EnsemblPlantsGene:GSBRNA2T00143331001	Gene3D:3.90.1410.10	InterPro:IPR036464	InterPro:Rubisco_LSMT_subst-bd_sf	PANTHER:PTHR13271
PANTHER:PTHR13271:SF9	ProteinID:CDX85607	ProteinID:CDX85607.1	SUPFAM:SSF81822	SUPFAM:SSF82199	UniParc:UPI0004EE55D8
MapMan:35.2	:	:	:	:	:

Description

BnaA02g02060D

Coordinates

chrLK031842:-:850030..851845

Molecular Weight (calculated)

41743.3 Da

IEP (calculated)

6.313

GRAVY (calculated)

-0.200

Length

371 amino acids

Sequence
(BLAST)

001: MEGVTTCFHT KCVSLPARPI PLSRWRNRNL VSSIPRRSLC VSASSSDTLL AARSPKEEDT HSKVSSKGDD SEDLKLWMDK KGLPPDPLMI RTINLYITLL
101: LKGDVAFSVP NSLVVTLERV LGNETIAELL TTNKLSELAC LALYLMYEKK QGKKSVWYPY IRELDRQRGR GQLDVESPLL WSEAELEYLT GSPTKAEVLE
201: RAEGIKREYS ELDTVWFMAG SLFQQYPFDI PTEAFSFEIF KQAFVAIQSC VVHLQNVSLA RRFALVPLGP PLLAYCSNCK AMLTAVDGAV ELVVDRAYKA
301: GDPIVAWCGP QPNAKLLLNY GFVDEDNPYD RIIVEAALST DDPQYQDKRL VAQRNGKLSQ QVFQVRVEKE R

Best Arabidopsis Sequence Match ( AT5G14260.2 )
(BLAST)

001: MEGVITCFHT KCVSLPIRSF PLSRVSSLPR WRNNKLISSS RSVHLRSLCV SSSDTLVASG SPKEDERQSK VSSKKEGDDS EDLKFWMDKN GLPPCKVILK
101: ERPAHDQKHK PIHYVAASED LQKGDVAFSV PDSLVVTLER VLGNETIAEL LTTNKLSELA CLALYLMYEK KQGKKSVWYP YIRELDRQRG RGQLDAESPL
201: LWSEAELDYL TGSPTKAEVL ERAEGIKREY NELDTVWFMA GSLFQQYPFD IPTEAFSFEI FKQAFVAIQS CVVHLQNVGL ARRFALVPLG PPLLAYCSNC
301: KAMLTAVDGA VELVVDRPYK AGDPIVVWCG PQPNAKLLLN YGFVDEDNPY DRVIVEAALN TEDPQYQDKR MVAQRNGKLS QQVFQVRVGK EREAVQDMLP
401: YLRLGYMSDP SEMQSVISSQ GPVCPMSPCM ERAVLDQLAN YFMRRLSGYP TTPKEDDALL ADPSLSPRKR VATRLVQLEK KILVACLTTT VDLLNQLPDT
501: AISPCPAPYA PSLK

Arabidopsis Description

Rubisco methyltransferase family protein [Source:UniProtKB/TrEMBL;Acc:Q8VZB5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.