Factsheet for HORVU5Hr1G033180.3

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 4
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	vacuole

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU2Hr1G031310.9
HORVU5Hr1G062290.6

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G14260.1	HORVU2Hr1G031310.9	AT1G19180.1	21798944
AT5G14260.1	HORVU5Hr1G062290.6	AT1G19180.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G123700.2	Wheat	plastid	91.32	96.61
TraesCS5A01G106100.1	Wheat	golgi	91.32	96.61
TraesCS5B01G110900.1	Wheat	plastid	90.75	89.74
Zm00001d044101_P002	Maize	cytosol	63.21	87.47
Os12t0236900-01	Rice	plastid	78.87	82.12
EES01150	Sorghum	plastid	77.17	79.88
Zm00001d011448_P002	Maize	plastid	75.66	74.26
CDX91073	Canola	mitochondrion, nucleus, plastid	56.6	69.93
GSMUA_Achr3P16970_001	Banana	plastid	64.72	67.39
VIT_14s0171g00310.t01	Wine grape	plastid	61.7	64.24
KRG94324	Soybean	plastid	60.57	63.94
CDX85607	Canola	plastid	44.72	63.88
KRH57642	Soybean	plastid	60.19	63.42
Bra008769.1-P	Field mustard	plastid	61.13	62.79
Bra023454.1-P	Field mustard	plastid	59.81	62.77
AT5G14260.1	Thale cress	plastid	60.19	62.06
CDX85606	Canola	cytosol	11.7	60.78
PGSC0003DMT400017960	Potato	plastid	60.0	60.57
Solyc02g068050.2.1	Tomato	plastid	48.68	60.0
CDX69594	Canola	cytosol	61.32	35.44
CDY57896	Canola	cytosol	60.57	35.01
HORVU6Hr1G072050.4	Barley	mitochondrion, plastid	21.51	21.84
HORVU5Hr1G066350.2	Barley	plastid	20.57	21.16

Protein Annotations

Gene3D:3.90.1410.10	Gene3D:3.90.1420.10	MapMan:35.2	UniProt:A0A287QTQ6	ncoils:Coil	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570
EnsemblPlantsGene:HORVU5Hr1G033180	EnsemblPlants:HORVU5Hr1G033180.3	InterPro:IPR036464	PFAM:PF09273	PANTHER:PTHR13271	PANTHER:PTHR13271:SF9
InterPro:Rubisco_LSMT_subst-bd	InterPro:Rubisco_LSMT_subst-bd_sf	SUPFAM:SSF81822	SUPFAM:SSF82199	SignalP:SignalP-noTM	UniParc:UPI000B473E57
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chrchr5H:-:220715584..220784519

Molecular Weight (calculated)

58831.0 Da

IEP (calculated)

6.086

GRAVY (calculated)

-0.153

Length

530 amino acids

Sequence
(BLAST)

001: MIFAWKIWLH LSRLSLIHTN RSSEARAPPM ASSALSGTHH RLLLPCFLRR LPQPGSRSCS RLRLAACHAD TLLSSSGAQG PPSPAACLSA SSAGGFSDWL
101: LTNGLPPGKL AILERPVPCS RGGRDRPLHF VAAGQDLEAG DVAFEVPMSL VVTLERVLGD ESVAELLTTN KLSELACLAL YLMYEKKQGR DSLWYPYIKE
201: LDRQRGRGQL AVESPLLWTE SELDYLNGSP MRDEVVVRDE GIKKEYNELD TLWFMAGSLF KQYPFDVPTE AFPFEIFKQA FVAVQSCVVH LQKVSLARRF
301: ALVPLGPPLL TYKSNCKAML TAVDGSVRLL VDRPYKAGEP IIVWCGPQPN SRLLLNYGFV DEDNPYDRIA IEASLNTEDP QYQEKRMVAQ RNGKLAIQKF
401: QVCVGKEKET ISEMLPYLRL GYISDPDEMQ CILSSEGDTC PVSPCSERAV LDQLVVYLKS RLAGYPTNLD EDEAMLADGS LEPKKEVATR LVRLEKKMLH
501: GCLEAANEFI SGLPDHTVSP CPALYAPELK

Best Arabidopsis Sequence Match ( AT5G14260.2 )
(BLAST)

001: MEGVITCFHT KCVSLPIRSF PLSRVSSLPR WRNNKLISSS RSVHLRSLCV SSSDTLVASG SPKEDERQSK VSSKKEGDDS EDLKFWMDKN GLPPCKVILK
101: ERPAHDQKHK PIHYVAASED LQKGDVAFSV PDSLVVTLER VLGNETIAEL LTTNKLSELA CLALYLMYEK KQGKKSVWYP YIRELDRQRG RGQLDAESPL
201: LWSEAELDYL TGSPTKAEVL ERAEGIKREY NELDTVWFMA GSLFQQYPFD IPTEAFSFEI FKQAFVAIQS CVVHLQNVGL ARRFALVPLG PPLLAYCSNC
301: KAMLTAVDGA VELVVDRPYK AGDPIVVWCG PQPNAKLLLN YGFVDEDNPY DRVIVEAALN TEDPQYQDKR MVAQRNGKLS QQVFQVRVGK EREAVQDMLP
401: YLRLGYMSDP SEMQSVISSQ GPVCPMSPCM ERAVLDQLAN YFMRRLSGYP TTPKEDDALL ADPSLSPRKR VATRLVQLEK KILVACLTTT VDLLNQLPDT
501: AISPCPAPYA PSLK

Arabidopsis Description

Rubisco methyltransferase family protein [Source:UniProtKB/TrEMBL;Acc:Q8VZB5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.