Factsheet for Zm00001d044101_P002

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, secretory
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d005813_P002
Zm00001d006860_P001
Zm00001d020614_P001
Zm00001d022139_P001
Zm00001d029448_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G14260.1	Zm00001d005813_P002	AT1G19180.1	21798944
AT5G14260.1	Zm00001d006860_P001	AT1G19180.1	21798944
AT5G14260.1	Zm00001d020614_P001	AT1G19180.1	21798944
AT5G14260.1	Zm00001d022139_P001	AT1G19180.1	21798944
AT5G14260.1	Zm00001d029448_P001	AT1G19180.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES01150	Sorghum	plastid	96.87	72.46
Os12t0236900-01	Rice	plastid	91.64	68.96
TraesCS5D01G123700.2	Wheat	plastid	88.51	67.66
TraesCS5A01G106100.1	Wheat	golgi	87.99	67.27
Zm00001d011448_P002	Maize	plastid	93.73	66.48
CDX91073	Canola	mitochondrion, nucleus, plastid	73.89	65.97
TraesCS5B01G110900.1	Wheat	plastid	88.51	63.25
HORVU5Hr1G033180.3	Barley	mitochondrion	87.47	63.21
CDX85606	Canola	cytosol	16.19	60.78
VIT_14s0171g00310.t01	Wine grape	plastid	78.85	59.33
GSMUA_Achr3P16970_001	Banana	plastid	77.55	58.35
KRG94324	Soybean	plastid	75.98	57.97
KRH57642	Soybean	plastid	75.98	57.85
Bra023454.1-P	Field mustard	plastid	74.41	56.44
AT5G14260.1	Thale cress	plastid	74.67	55.64
Bra008769.1-P	Field mustard	plastid	74.15	55.04
CDX85607	Canola	plastid	53.0	54.72
PGSC0003DMT400017960	Potato	plastid	74.15	54.1
Solyc02g068050.2.1	Tomato	plastid	58.75	52.33
CDX69594	Canola	cytosol	74.93	31.3
CDY57896	Canola	cytosol	74.67	31.19
Zm00001d051668_P001	Maize	plastid	24.28	18.49
Zm00001d020437_P001	Maize	plastid	23.24	18.2
Zm00001d051669_P002	Maize	plastid	24.02	18.0
Zm00001d034120_P001	Maize	cytosol	4.96	16.67

Protein Annotations

Gene3D:3.90.1410.10	Gene3D:3.90.1420.10	MapMan:35.2	UniProt:A0A1D6NHR4	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0016740	GO:GO:0032259	InterPro:IPR036464
ProteinID:ONM39921.1	ProteinID:ONM39923.1	PFAM:PF09273	PANTHER:PTHR13271	PANTHER:PTHR13271:SF9	InterPro:Rubisco_LSMT_subst-bd
InterPro:Rubisco_LSMT_subst-bd_sf	SUPFAM:SSF81822	SUPFAM:SSF82199	UniParc:UPI00084419BF	EnsemblPlantsGene:Zm00001d044101	EnsemblPlants:Zm00001d044101_P002
EnsemblPlants:Zm00001d044101_T002	:	:	:	:	:

Description

Rubisco methyltransferase family protein

Coordinates

chr3:-:219135721..219144864

Molecular Weight (calculated)

43347.9 Da

IEP (calculated)

4.590

GRAVY (calculated)

-0.262

Length

383 amino acids

Sequence
(BLAST)

001: MSLVVTLERV LGDESIAELL TNNKLSELAC LALYLMYEKK QGKDSFWYPY IKELDRHRGR GQLAVESPLL WTESELDYLT GSPLKDEVVA RDEAIRREYN
101: ELDTLWFMAG SLFQQYPFDI PTEAFPFEIF KQAFVAVQSC VVHLQKVSLA RRFALVPLGP PLLTYRSNCK AMLTADGDSV RLVVDRPYKA GEPIIIWCGP
201: QTNSRLVLNY GFVDEDNPFD RVAIEASLNT EDPQYQEKRM VAQRNGKLAI QNFNVYVGKE KQTVAEMLPY LRLGYISNPD EMQSILSSEG DTCPVSPCTE
301: RAVLDQLVGY LESRLAGYPT TLDEDEAMLA DGNLEPKKEV ATRLVRLEKK MLHACLQATN EFINDLPDHT VSPCPAPYAP ELK

Best Arabidopsis Sequence Match ( AT5G14260.2 )
(BLAST)

001: MEGVITCFHT KCVSLPIRSF PLSRVSSLPR WRNNKLISSS RSVHLRSLCV SSSDTLVASG SPKEDERQSK VSSKKEGDDS EDLKFWMDKN GLPPCKVILK
101: ERPAHDQKHK PIHYVAASED LQKGDVAFSV PDSLVVTLER VLGNETIAEL LTTNKLSELA CLALYLMYEK KQGKKSVWYP YIRELDRQRG RGQLDAESPL
201: LWSEAELDYL TGSPTKAEVL ERAEGIKREY NELDTVWFMA GSLFQQYPFD IPTEAFSFEI FKQAFVAIQS CVVHLQNVGL ARRFALVPLG PPLLAYCSNC
301: KAMLTAVDGA VELVVDRPYK AGDPIVVWCG PQPNAKLLLN YGFVDEDNPY DRVIVEAALN TEDPQYQDKR MVAQRNGKLS QQVFQVRVGK EREAVQDMLP
401: YLRLGYMSDP SEMQSVISSQ GPVCPMSPCM ERAVLDQLAN YFMRRLSGYP TTPKEDDALL ADPSLSPRKR VATRLVQLEK KILVACLTTT VDLLNQLPDT
501: AISPCPAPYA PSLK

Arabidopsis Description

Rubisco methyltransferase family protein [Source:UniProtKB/TrEMBL;Acc:Q8VZB5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.