Factsheet for Zm00001d051668_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 22065420
plastid: 23198870

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d037747_P001
Zm00001d039455_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G07670.1	Zm00001d037747_P001	AT3G13720.1	21798944
AT3G07670.1	Zm00001d039455_P002	AT3G13720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES07338	Sorghum	plastid	94.43	95.19
Zm00001d051669_P002	Maize	plastid	89.07	87.67
Os02t0725200-01	Rice	plasma membrane	85.88	86.06
TraesCS6A01G286800.2	Wheat	plastid	83.9	83.73
TraesCS6B01G315800.1	Wheat	plastid	83.3	82.64
TraesCS6D01G267500.2	Wheat	plastid	83.3	82.48
HORVU6Hr1G072050.4	Barley	mitochondrion, plastid	82.7	79.69
GSMUA_Achr3P10760_001	Banana	plastid	71.17	71.31
VIT_12s0057g01250.t01	Wine grape	plastid	67.2	68.01
AT3G07670.1	Thale cress	plastid	66.8	66.67
Solyc07g045310.2.1	Tomato	nucleus	65.81	66.07
PGSC0003DMT400044855	Potato	plastid	66.0	65.87
Bra040022.1-P	Field mustard	plastid	66.2	65.68
CDY22127	Canola	plastid	65.81	65.29
KRH17729	Soybean	plastid	63.62	64.13
Zm00001d034120_P001	Maize	cytosol	14.31	63.16
Zm00001d044101_P002	Maize	cytosol	18.49	24.28
Zm00001d020437_P001	Maize	plastid	21.47	22.09
Zm00001d011448_P002	Maize	plastid	22.66	21.11

Protein Annotations

EntrezGene:100272441	Gene3D:3.90.1410.10	Gene3D:3.90.1420.10	MapMan:50.2.1	ProteinID:AQK54824.1	ProteinID:AQK54827.1
UniProt:B4FNM7	EMBL:BT038715	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152
GO:GO:0008168	GO:GO:0009507	GO:GO:0009536	GO:GO:0016740	GO:GO:0030785	GO:GO:0032259
InterPro:IPR001214	InterPro:IPR011192	InterPro:IPR036464	PFAM:PF00856	PFAM:PF09273	PIRSF:PIRSF009328
PFscan:PS50280	PANTHER:PTHR13271	PANTHER:PTHR13271:SF81	InterPro:Rubisco_LSMT_MeTrfase_plant	InterPro:Rubisco_LSMT_subst-bd	InterPro:Rubisco_LSMT_subst-bd_sf
InterPro:SET_dom	SMART:SM00317	SUPFAM:SSF81822	SUPFAM:SSF82199	UniParc:UPI00017B6C08	EnsemblPlantsGene:Zm00001d051668
EnsemblPlants:Zm00001d051668_P001	EnsemblPlants:Zm00001d051668_T001	SEG:seg	:	:	:

Description

Rubisco methyltransferase family protein

Coordinates

chr4:+:166173429..166179008

Molecular Weight (calculated)

56611.9 Da

IEP (calculated)

8.592

GRAVY (calculated)

-0.284

Length

503 amino acids

Sequence
(BLAST)

001: MATSSTTALH SQFRPPLRAP RHLRPLPHSY SSSSRTRGCA PVRASAASAS APAQREIAAG VPWGCEIESL ESAASLERWL IDSGLPEQRL AIQRVDIGER
101: GLVALKNIRK GEKLLFVPPS LVITADSEWG RPEVGDVMKR NSVPDWPLIA TYLISEASLE GSSRWISYIA ALPRQPYSLL YWTRAELDAY LVASPIRKRA
201: IQRITDVIGT YNDLRDRIFS RHPDLFPEEV YNIETFLWSF GILFSRLVRL PSMDGRVALV PWADMLNHSP EVETFLDFDK SSRGIVFTTD RSYQPGEQVF
301: ISYGKKSSGE LLLSYGFVPK EGTNPNDSVE LLVSLDKSDN CYKEKLQALK RNGLSESESF PLRVTGWPVE LMAYAFLVVS PPDMSQCFEE MAAAASNKTS
401: SKPGLNYPDL EEQALQFILD CCESNIEKYT KYLEGGAGSP EVPMNAKQAN RTLLLKQLAR DLCISERRIL YRTQYILRRR LRDMRGGELR ALSLFNGLRK
501: LFK

Best Arabidopsis Sequence Match ( AT3G07670.1 )
(BLAST)

001: MAKACLLQST LLPAYSPLHK LRNQNITLSF SPLPLSRCRP GIHCSVSAGE TTIQSMEEAP KISWGCEIDS LENATSLQNW LSDSGLPPQK MAIDRVDIGE
101: RGLVASQNLR KGEKLLFVPP SLVISADSEW TNAEAGEVMK RYDVPDWPLL ATYLISEASL QKSSRWFNYI SALPRQPYSL LYWTRTELDM YLEASQIRER
201: AIERITNVVG TYEDLRSRIF SKHPQLFPKE VFNDETFKWS FGILFSRLVR LPSMDGRFAL VPWADMLNHN CEVETFLDYD KSSKGVVFTT DRPYQPGEQV
301: FISYGNKSNG ELLLSYGFVP REGTNPSDSV ELALSLRKND KCYEEKLDAL KKHGLSTPQC FPVRITGWPM ELMAYAYLVV SPPDMRNNFE EMAKAASNKT
401: STKNDLKYPE IEEDALQFIL DSCETSISKY SRFLKESGSM DLDITSPKQL NRKAFLKQLA VDLSTSERRI LYRAQYILRR RLRDIRSGEL KALRLFSGLR
501: NFFK

Arabidopsis Description

Putative ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit N-methyltransferase I [Source:UniProtKB/TrEMBL;Acc:Q9S7D2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.