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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 8
  • cytosol 1
  • mitochondrion 1
PPI

Inferred distinct locusB in Crop

locusBlocations
EES00126
OQU77594

Inferred from Arabidopsis experimental PPI

Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d051668_P001 Maize plastid 95.19 94.43
Os02t0725200-01 Rice plasma membrane 85.97 85.46
Zm00001d051669_P002 Maize plastid 84.77 82.78
TraesCS6A01G286800.2 Wheat plastid 83.37 82.54
TraesCS6B01G315800.1 Wheat plastid 83.17 81.85
TraesCS6D01G267500.2 Wheat plastid 82.97 81.5
HORVU6Hr1G072050.4 Barley mitochondrion, plastid 82.57 78.93
GSMUA_Achr3P10760_001 Banana plastid 71.14 70.72
VIT_12s0057g01250.t01 Wine grape plastid 68.74 69.01
AT3G07670.1 Thale cress plastid 66.33 65.67
Solyc07g045310.2.1 Tomato nucleus 65.73 65.47
Bra040022.1-P Field mustard plastid 65.73 64.69
PGSC0003DMT400044855 Potato plastid 65.33 64.68
CDY22127 Canola plastid 65.33 64.3
KRH17729 Soybean plastid 63.13 63.13
EES01150 Sorghum plastid 22.44 21.88
KXG35611 Sorghum plastid 21.44 21.84
Protein Annotations
Gene3D:3.90.1410.10Gene3D:3.90.1420.10MapMan:50.2.1EntrezGene:8077716UniProt:C5XZR8EnsemblPlants:EES07338
ProteinID:EES07338ProteinID:EES07338.1GO:GO:0003674GO:GO:0003824GO:GO:0005488GO:GO:0005515
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0006464GO:GO:0008150
GO:GO:0008152GO:GO:0009507GO:GO:0009536GO:GO:0009987GO:GO:0016279GO:GO:0016740
GO:GO:0018026GO:GO:0019538GO:GO:0030785InterPro:IPR001214InterPro:IPR011192InterPro:IPR036464
PFAM:PF00856PFAM:PF09273PIRSF:PIRSF009328PFscan:PS50280PANTHER:PTHR13271PANTHER:PTHR13271:SF81
InterPro:Rubisco_LSMT_MeTrfase_plantInterPro:Rubisco_LSMT_subst-bdInterPro:Rubisco_LSMT_subst-bd_sfInterPro:SET_domSMART:SM00317EnsemblPlantsGene:SORBI_3004G255500
SUPFAM:SSF81822SUPFAM:SSF82199unigene:Sbi.6846UniParc:UPI0001A85B62RefSeq:XP_002454362.1SEG:seg
Description
hypothetical protein
Coordinates
chr4:-:60155140..60160609
Molecular Weight (calculated)
56250.4 Da
IEP (calculated)
8.969
GRAVY (calculated)
-0.306
Length
499 amino acids
Sequence
(BLAST)
001: MATSTTTLHP PLRAPRHLRP LPHSYSSSFS RTRGRAPIRA SAASASAPAQ REAAAGVPWG CEIESLESAA SLERWLIDSG LPEQRLAIQR VDIGERGLVA
101: LKNIRKGEKL LFVPPSLVIT ADSEWGRPEV GEVMKRNSVP DWPLIATYLI SEASLEGSSR WSSYIAALPR QPYSLLYWTR AELDAYLVAS PIRKRAIQRI
201: TDVIGTYNDL RDRIFSRHSD LFPEEVYNIE TFLWSFGILF SRLVRLPSMD EKVALVPWAD MLNHSPEVET FLDFDKSSQG IVFTTDRSYQ PGEQVFISYG
301: KKSSGELLLS YGFVPKEGTN PNDSVELLVS LDKSDKCYKE KLQALKRNGL SESESFPLRV TGWPVELMAY AFLVVSPPDM SQHFEEMAVA ASNKSSSKPR
401: LSYPDLEEQA LQFILDCCEP NIAKYTKYLE GGGGSPEVSM NAKQANRTLL LKQVARDLCI SERRILYRTQ YILRRRLRDM RGGELRALSL FNGLRKLFK
Best Arabidopsis Sequence Match ( AT3G07670.1 )
(BLAST)
001: MAKACLLQST LLPAYSPLHK LRNQNITLSF SPLPLSRCRP GIHCSVSAGE TTIQSMEEAP KISWGCEIDS LENATSLQNW LSDSGLPPQK MAIDRVDIGE
101: RGLVASQNLR KGEKLLFVPP SLVISADSEW TNAEAGEVMK RYDVPDWPLL ATYLISEASL QKSSRWFNYI SALPRQPYSL LYWTRTELDM YLEASQIRER
201: AIERITNVVG TYEDLRSRIF SKHPQLFPKE VFNDETFKWS FGILFSRLVR LPSMDGRFAL VPWADMLNHN CEVETFLDYD KSSKGVVFTT DRPYQPGEQV
301: FISYGNKSNG ELLLSYGFVP REGTNPSDSV ELALSLRKND KCYEEKLDAL KKHGLSTPQC FPVRITGWPM ELMAYAYLVV SPPDMRNNFE EMAKAASNKT
401: STKNDLKYPE IEEDALQFIL DSCETSISKY SRFLKESGSM DLDITSPKQL NRKAFLKQLA VDLSTSERRI LYRAQYILRR RLRDIRSGEL KALRLFSGLR
501: NFFK
Arabidopsis Description
Putative ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit N-methyltransferase I [Source:UniProtKB/TrEMBL;Acc:Q9S7D2]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.