Factsheet for TraesCS6A01G286800.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G124100.1
TraesCS1B01G143000.1
TraesCS1D01G130300.1
TraesCS3A01G104300.1
TraesCS3B01G122600.1
TraesCS3D01G106500.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G07670.1	TraesCS1A01G124100.1	AT3G13720.1	21798944
AT3G07670.1	TraesCS1B01G143000.1	AT3G13720.1	21798944
AT3G07670.1	TraesCS1D01G130300.1	AT3G13720.1	21798944
AT3G07670.1	TraesCS3A01G104300.1	AT3G13720.1	21798944
AT3G07670.1	TraesCS3B01G122600.1	AT3G13720.1	21798944
AT3G07670.1	TraesCS3D01G106500.1	AT3G13720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G315800.1	Wheat	plastid	97.62	97.04
TraesCS6D01G267500.2	Wheat	plastid	96.43	95.67
HORVU6Hr1G072050.4	Barley	mitochondrion, plastid	96.23	92.91
Zm00001d051668_P001	Maize	plastid	83.73	83.9
EES07338	Sorghum	plastid	82.54	83.37
Os02t0725200-01	Rice	plasma membrane	82.74	83.07
Zm00001d051669_P002	Maize	plastid	75.99	74.95
GSMUA_Achr3P10760_001	Banana	plastid	67.66	67.93
VIT_12s0057g01250.t01	Wine grape	plastid	65.67	66.6
Solyc07g045310.2.1	Tomato	nucleus	65.08	65.47
AT3G07670.1	Thale cress	plastid	65.08	65.08
PGSC0003DMT400044855	Potato	plastid	64.88	64.88
Bra040022.1-P	Field mustard	plastid	64.88	64.5
CDY22127	Canola	plastid	64.48	64.1
KRH17729	Soybean	plastid	61.31	61.92
TraesCS5A01G106100.1	Wheat	golgi	22.82	22.95
TraesCS3A01G539300.2	Wheat	mitochondrion	20.24	21.94
TraesCS5A01G229500.2	Wheat	plastid	20.04	20.36

Protein Annotations

EnsemblPlants:TraesCS6A01G286800.2	EnsemblPlantsGene:TraesCS6A01G286800	Gene3D:3.90.1410.10	Gene3D:3.90.1420.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR001214	InterPro:IPR036464	InterPro:Rubisco_LSMT_subst-bd	InterPro:Rubisco_LSMT_subst-bd_sf	InterPro:SET_dom
PANTHER:PTHR13271	PANTHER:PTHR13271:SF81	PFAM:PF00856	PFAM:PF09273	PFscan:PS50280	SEG:seg
SMART:SM00317	SUPFAM:SSF81822	SUPFAM:SSF82199	MapMan:50.2.1	:	:

Description

No Description!

Coordinates

chr6A:+:519205403..519209707

Molecular Weight (calculated)

56846.1 Da

IEP (calculated)

9.109

GRAVY (calculated)

-0.314

Length

504 amino acids

Sequence
(BLAST)

001: MATTTTTALH PQFRPPSHPR ATRRLRPCPS SSSVRPRFSV RAAAASASAS APAQREVVAG VPWGCEIESL ESAASLERWL TASGLPEQRL ALEKVDIGER
101: GLVALKNVRN GEKLLFVPPT LVITADSEWS NREVGDVMKR YSVPDWPLLA TYLISEASLE GSSKWRSYID ALPRQPYSLL YWTRTEIDAY LVASPIRERA
201: ISRIGDVIGT YNDLRDRIFS KYPDLFPEKV YNMENFRWSF GILFSRLVRL ESMDGKVALV PWADMLNHSP EVDAFLDYDK SSQGIVFTTD RSYQPGEQVF
301: ISYGKKSSGE LLLSYGFVPK EGTNPNDSVE FLVSLNKSDE CYKEKLQALK KHGLSESESF PLRVTGWPVE LMAYAFLVVS PPEMIQRFEE MAVAASNKGS
401: SKPALNYPEL DEQALQFILD CCESSIKKYT KYLEGAKGSA EVSINTKQAN RTLLLKQLAR DLCISERRIL YRSQYILRRR LRDMRAGGEL KALSLFNGLR
501: KLFK

Best Arabidopsis Sequence Match ( AT3G07670.1 )
(BLAST)

001: MAKACLLQST LLPAYSPLHK LRNQNITLSF SPLPLSRCRP GIHCSVSAGE TTIQSMEEAP KISWGCEIDS LENATSLQNW LSDSGLPPQK MAIDRVDIGE
101: RGLVASQNLR KGEKLLFVPP SLVISADSEW TNAEAGEVMK RYDVPDWPLL ATYLISEASL QKSSRWFNYI SALPRQPYSL LYWTRTELDM YLEASQIRER
201: AIERITNVVG TYEDLRSRIF SKHPQLFPKE VFNDETFKWS FGILFSRLVR LPSMDGRFAL VPWADMLNHN CEVETFLDYD KSSKGVVFTT DRPYQPGEQV
301: FISYGNKSNG ELLLSYGFVP REGTNPSDSV ELALSLRKND KCYEEKLDAL KKHGLSTPQC FPVRITGWPM ELMAYAYLVV SPPDMRNNFE EMAKAASNKT
401: STKNDLKYPE IEEDALQFIL DSCETSISKY SRFLKESGSM DLDITSPKQL NRKAFLKQLA VDLSTSERRI LYRAQYILRR RLRDIRSGEL KALRLFSGLR
501: NFFK

Arabidopsis Description

Putative ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit N-methyltransferase I [Source:UniProtKB/TrEMBL;Acc:Q9S7D2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.