Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 6
- cytosol 1
- mitochondrion 1
- nucleus 1
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
Solyc03g121460.1.1 |
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT3G07670.1 | Solyc03g121460.1.1 | AT3G13720.1 | 21798944 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
PGSC0003DMT400044855 | Potato | plastid | 95.41 | 94.84 |
VIT_12s0057g01250.t01 | Wine grape | plastid | 74.45 | 75.05 |
AT3G07670.1 | Thale cress | plastid | 72.85 | 72.42 |
Bra040022.1-P | Field mustard | plastid | 71.26 | 70.41 |
KRH17729 | Soybean | plastid | 70.06 | 70.34 |
CDY22127 | Canola | plastid | 70.86 | 70.02 |
GSMUA_Achr3P10760_001 | Banana | plastid | 68.86 | 68.73 |
Os02t0725200-01 | Rice | plasma membrane | 66.67 | 66.53 |
Zm00001d051668_P001 | Maize | plastid | 66.07 | 65.81 |
EES07338 | Sorghum | plastid | 65.47 | 65.73 |
TraesCS6A01G286800.2 | Wheat | plastid | 65.47 | 65.08 |
TraesCS6B01G315800.1 | Wheat | plastid | 65.67 | 64.89 |
TraesCS6D01G267500.2 | Wheat | plastid | 65.27 | 64.37 |
HORVU6Hr1G072050.4 | Barley | mitochondrion, plastid | 65.47 | 62.84 |
Zm00001d051669_P002 | Maize | plastid | 61.48 | 60.27 |
Zm00001d034120_P001 | Maize | cytosol | 9.18 | 40.35 |
Solyc02g068050.2.1 | Tomato | plastid | 20.16 | 23.49 |
Solyc05g013150.2.1 | Tomato | plastid | 19.76 | 21.24 |
Solyc06g036700.1.1 | Tomato | mitochondrion | 8.58 | 21.18 |
Solyc05g013160.2.1 | Tomato | plastid | 19.56 | 20.08 |
Solyc06g036670.1.1 | Tomato | cytosol | 8.18 | 18.39 |
Protein Annotations
Gene3D:3.90.1410.10 | Gene3D:3.90.1420.10 | MapMan:50.2.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 |
GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006464 |
GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009507 | GO:GO:0009536 | GO:GO:0009987 | GO:GO:0016279 |
GO:GO:0016740 | GO:GO:0018026 | GO:GO:0019538 | GO:GO:0030785 | InterPro:IPR001214 | InterPro:IPR011192 |
InterPro:IPR036464 | UniProt:K4CET8 | PFAM:PF00856 | PFAM:PF09273 | PIRSF:PIRSF009328 | PFscan:PS50280 |
PANTHER:PTHR13271 | PANTHER:PTHR13271:SF81 | InterPro:Rubisco_LSMT_MeTrfase_plant | InterPro:Rubisco_LSMT_subst-bd | InterPro:Rubisco_LSMT_subst-bd_sf | InterPro:SET_dom |
SMART:SM00317 | SUPFAM:SSF81822 | SUPFAM:SSF82199 | EnsemblPlantsGene:Solyc07g045310.2 | EnsemblPlants:Solyc07g045310.2.1 | UniParc:UPI000276CA12 |
SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr7:+:58405479..58415648
Molecular Weight (calculated)
57303.5 Da
IEP (calculated)
8.931
GRAVY (calculated)
-0.372
Length
501 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEVTKILQP VLLPPFFHKL DGTTNSHFRL CRRNRRNISI RCSSISTTET NKSTKTQNIP WGCETDSIEN ASNLQKWLTE SGLPAQKLDL QRVNVGERGL
101: VANNNIRKGE RLLFVPPSLV ITADSKWSNS DAGDVLKQYN VPDWPFIATY LISEASLMKS SRWSNYISAL PRQPYSLLYW TQSELDRYLE ASQIRQRAVE
201: RINNVIGTYN DLRLRIFSKH PDLFPEEIFN IETFNWSFGI LFSRLVRLPS MDGRVALVPW ADMLNHNCEV ETFLDYDKSS QGIVFTTDRA YLPGEQVFIS
301: YGRKSNGELL LSYGFVPKEG TNPSDSVEVS LALKKSDKCY KEKVEALKKH GLSASECFPV QVTGWPLELM AFAYLVVSPP SMSRQFEEMA AAASNKATSK
401: KDIKYPEIEE DALQFILDSC ESSISKYSKF LQASGEMDLD VTNPKQLNRR VFLKQLAVDL CTSERRILYR SQYILRRRLR DIRSGELRAL NLFDGLKNLF
501: K
101: VANNNIRKGE RLLFVPPSLV ITADSKWSNS DAGDVLKQYN VPDWPFIATY LISEASLMKS SRWSNYISAL PRQPYSLLYW TQSELDRYLE ASQIRQRAVE
201: RINNVIGTYN DLRLRIFSKH PDLFPEEIFN IETFNWSFGI LFSRLVRLPS MDGRVALVPW ADMLNHNCEV ETFLDYDKSS QGIVFTTDRA YLPGEQVFIS
301: YGRKSNGELL LSYGFVPKEG TNPSDSVEVS LALKKSDKCY KEKVEALKKH GLSASECFPV QVTGWPLELM AFAYLVVSPP SMSRQFEEMA AAASNKATSK
401: KDIKYPEIEE DALQFILDSC ESSISKYSKF LQASGEMDLD VTNPKQLNRR VFLKQLAVDL CTSERRILYR SQYILRRRLR DIRSGELRAL NLFDGLKNLF
501: K
001: MAKACLLQST LLPAYSPLHK LRNQNITLSF SPLPLSRCRP GIHCSVSAGE TTIQSMEEAP KISWGCEIDS LENATSLQNW LSDSGLPPQK MAIDRVDIGE
101: RGLVASQNLR KGEKLLFVPP SLVISADSEW TNAEAGEVMK RYDVPDWPLL ATYLISEASL QKSSRWFNYI SALPRQPYSL LYWTRTELDM YLEASQIRER
201: AIERITNVVG TYEDLRSRIF SKHPQLFPKE VFNDETFKWS FGILFSRLVR LPSMDGRFAL VPWADMLNHN CEVETFLDYD KSSKGVVFTT DRPYQPGEQV
301: FISYGNKSNG ELLLSYGFVP REGTNPSDSV ELALSLRKND KCYEEKLDAL KKHGLSTPQC FPVRITGWPM ELMAYAYLVV SPPDMRNNFE EMAKAASNKT
401: STKNDLKYPE IEEDALQFIL DSCETSISKY SRFLKESGSM DLDITSPKQL NRKAFLKQLA VDLSTSERRI LYRAQYILRR RLRDIRSGEL KALRLFSGLR
501: NFFK
101: RGLVASQNLR KGEKLLFVPP SLVISADSEW TNAEAGEVMK RYDVPDWPLL ATYLISEASL QKSSRWFNYI SALPRQPYSL LYWTRTELDM YLEASQIRER
201: AIERITNVVG TYEDLRSRIF SKHPQLFPKE VFNDETFKWS FGILFSRLVR LPSMDGRFAL VPWADMLNHN CEVETFLDYD KSSKGVVFTT DRPYQPGEQV
301: FISYGNKSNG ELLLSYGFVP REGTNPSDSV ELALSLRKND KCYEEKLDAL KKHGLSTPQC FPVRITGWPM ELMAYAYLVV SPPDMRNNFE EMAKAASNKT
401: STKNDLKYPE IEEDALQFIL DSCETSISKY SRFLKESGSM DLDITSPKQL NRKAFLKQLA VDLSTSERRI LYRAQYILRR RLRDIRSGEL KALRLFSGLR
501: NFFK
Arabidopsis Description
Putative ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit N-methyltransferase I [Source:UniProtKB/TrEMBL;Acc:Q9S7D2]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.