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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • plastid 6
  • cytosol 1
  • mitochondrion 1
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:plastid
ChloroP:plastid
iPSORT:plastid
MultiLoc:cytosol
Plant-mPloc:plastid
PProwler:plastid
TargetP:mitochondrion
WoLF PSORT:plastid
YLoc:nucleus
nucleus: 28394025
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc03g121460.1.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G07670.1 Solyc03g121460.1.1 AT3G13720.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400044855 Potato plastid 95.41 94.84
VIT_12s0057g01250.t01 Wine grape plastid 74.45 75.05
AT3G07670.1 Thale cress plastid 72.85 72.42
Bra040022.1-P Field mustard plastid 71.26 70.41
KRH17729 Soybean plastid 70.06 70.34
CDY22127 Canola plastid 70.86 70.02
GSMUA_Achr3P10760_001 Banana plastid 68.86 68.73
Os02t0725200-01 Rice plasma membrane 66.67 66.53
Zm00001d051668_P001 Maize plastid 66.07 65.81
EES07338 Sorghum plastid 65.47 65.73
TraesCS6A01G286800.2 Wheat plastid 65.47 65.08
TraesCS6B01G315800.1 Wheat plastid 65.67 64.89
TraesCS6D01G267500.2 Wheat plastid 65.27 64.37
HORVU6Hr1G072050.4 Barley mitochondrion, plastid 65.47 62.84
Zm00001d051669_P002 Maize plastid 61.48 60.27
Zm00001d034120_P001 Maize cytosol 9.18 40.35
Solyc02g068050.2.1 Tomato plastid 20.16 23.49
Solyc05g013150.2.1 Tomato plastid 19.76 21.24
Solyc06g036700.1.1 Tomato mitochondrion 8.58 21.18
Solyc05g013160.2.1 Tomato plastid 19.56 20.08
Solyc06g036670.1.1 Tomato cytosol 8.18 18.39
Protein Annotations
Gene3D:3.90.1410.10Gene3D:3.90.1420.10MapMan:50.2.1GO:GO:0003674GO:GO:0003824GO:GO:0005488
GO:GO:0005515GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0006464
GO:GO:0008150GO:GO:0008152GO:GO:0009507GO:GO:0009536GO:GO:0009987GO:GO:0016279
GO:GO:0016740GO:GO:0018026GO:GO:0019538GO:GO:0030785InterPro:IPR001214InterPro:IPR011192
InterPro:IPR036464UniProt:K4CET8PFAM:PF00856PFAM:PF09273PIRSF:PIRSF009328PFscan:PS50280
PANTHER:PTHR13271PANTHER:PTHR13271:SF81InterPro:Rubisco_LSMT_MeTrfase_plantInterPro:Rubisco_LSMT_subst-bdInterPro:Rubisco_LSMT_subst-bd_sfInterPro:SET_dom
SMART:SM00317SUPFAM:SSF81822SUPFAM:SSF82199EnsemblPlantsGene:Solyc07g045310.2EnsemblPlants:Solyc07g045310.2.1UniParc:UPI000276CA12
SEG:seg:::::
Description
No Description!
Coordinates
chr7:+:58405479..58415648
Molecular Weight (calculated)
57303.5 Da
IEP (calculated)
8.931
GRAVY (calculated)
-0.372
Length
501 amino acids
Sequence
(BLAST)
001: MAEVTKILQP VLLPPFFHKL DGTTNSHFRL CRRNRRNISI RCSSISTTET NKSTKTQNIP WGCETDSIEN ASNLQKWLTE SGLPAQKLDL QRVNVGERGL
101: VANNNIRKGE RLLFVPPSLV ITADSKWSNS DAGDVLKQYN VPDWPFIATY LISEASLMKS SRWSNYISAL PRQPYSLLYW TQSELDRYLE ASQIRQRAVE
201: RINNVIGTYN DLRLRIFSKH PDLFPEEIFN IETFNWSFGI LFSRLVRLPS MDGRVALVPW ADMLNHNCEV ETFLDYDKSS QGIVFTTDRA YLPGEQVFIS
301: YGRKSNGELL LSYGFVPKEG TNPSDSVEVS LALKKSDKCY KEKVEALKKH GLSASECFPV QVTGWPLELM AFAYLVVSPP SMSRQFEEMA AAASNKATSK
401: KDIKYPEIEE DALQFILDSC ESSISKYSKF LQASGEMDLD VTNPKQLNRR VFLKQLAVDL CTSERRILYR SQYILRRRLR DIRSGELRAL NLFDGLKNLF
501: K
Best Arabidopsis Sequence Match ( AT3G07670.1 )
(BLAST)
001: MAKACLLQST LLPAYSPLHK LRNQNITLSF SPLPLSRCRP GIHCSVSAGE TTIQSMEEAP KISWGCEIDS LENATSLQNW LSDSGLPPQK MAIDRVDIGE
101: RGLVASQNLR KGEKLLFVPP SLVISADSEW TNAEAGEVMK RYDVPDWPLL ATYLISEASL QKSSRWFNYI SALPRQPYSL LYWTRTELDM YLEASQIRER
201: AIERITNVVG TYEDLRSRIF SKHPQLFPKE VFNDETFKWS FGILFSRLVR LPSMDGRFAL VPWADMLNHN CEVETFLDYD KSSKGVVFTT DRPYQPGEQV
301: FISYGNKSNG ELLLSYGFVP REGTNPSDSV ELALSLRKND KCYEEKLDAL KKHGLSTPQC FPVRITGWPM ELMAYAYLVV SPPDMRNNFE EMAKAASNKT
401: STKNDLKYPE IEEDALQFIL DSCETSISKY SRFLKESGSM DLDITSPKQL NRKAFLKQLA VDLSTSERRI LYRAQYILRR RLRDIRSGEL KALRLFSGLR
501: NFFK
Arabidopsis Description
Putative ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit N-methyltransferase I [Source:UniProtKB/TrEMBL;Acc:Q9S7D2]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.