Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 3
- cytosol 2
- golgi 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc07g045310.2.1 | Tomato | nucleus | 18.39 | 8.18 |
| Solyc05g013150.2.1 | Tomato | plastid | 11.66 | 5.58 |
| Solyc05g013160.2.1 | Tomato | plastid | 10.76 | 4.92 |
| Solyc02g068050.2.1 | Tomato | plastid | 8.52 | 4.42 |
| Bra029668.1-P | Field mustard | endoplasmic reticulum, extracellular, vacuole | 4.04 | 4.33 |
| Bra040023.1-P | Field mustard | endoplasmic reticulum | 4.04 | 4.33 |
| CDX74033 | Canola | endoplasmic reticulum | 4.04 | 4.33 |
| CDY07978 | Canola | endoplasmic reticulum | 4.04 | 4.31 |
| Solyc06g036700.1.1 | Tomato | mitochondrion | 3.59 | 3.94 |
Protein Annotations
| EnsemblPlants:Solyc06g036670.1.1 | EnsemblPlantsGene:Solyc06g036670.1 | Gene3D:3.90.1420.10 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0006464 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016279 | GO:GO:0016740 | GO:GO:0018026 |
| GO:GO:0019538 | InterPro:IPR036464 | InterPro:Rubisco_LSMT_subst-bd | InterPro:Rubisco_LSMT_subst-bd_sf | PANTHER:PTHR13271 | PANTHER:PTHR13271:SF11 |
| PFAM:PF09273 | SEG:seg | UniParc:UPI0002766142 | UniProt:K4C532 | MapMan:35.2 | : |
Description
No Description!
Coordinates
chr6:-:27145179..27146369
Molecular Weight (calculated)
24723.2 Da
IEP (calculated)
10.001
GRAVY (calculated)
-0.169
Length
223 amino acids
Sequence
(BLAST)
(BLAST)
001: MVAKLISSEI ISTLPNYPPK LWSYLVTFHI KGISFSQVEV ELTIPHEDKL RQLKLKLLSK HQIPILKDVN GFSSSENSSA LKEVRFADAQ GRGIPQSIRA
101: FARVLCSNSP QEINYLAMEA AENDGRVARR PLKDKSREIQ AHQFLLSKIT GLIDEYNASI KKTKLSSLCK VHFYLAAKGG QQPLDGSPAT HAGRVALTIS
201: LNPPLYGIGI CLQLLCNSER KMP
101: FARVLCSNSP QEINYLAMEA AENDGRVARR PLKDKSREIQ AHQFLLSKIT GLIDEYNASI KKTKLSSLCK VHFYLAAKGG QQPLDGSPAT HAGRVALTIS
201: LNPPLYGIGI CLQLLCNSER KMP
001: MLFCISTVKL FGFQQRRNVS SLAKRFSLAG KLTLELQTQA SLDNNFLPWL ERIAGAKITN TLSIGKSTYG RSLFASKVIY AGDCMLKVPF NAQITPDELP
101: SDIRVLLSNE VGNIGMLAAV LIREKKMGQK SRWVPYISRL PQPAEMHSSI FWGEDELSMI RCSAVHQETV KQKAQIEKDF SFVAQAFKQH CPIVTERPDL
201: EDFMYAYALV GSRAWENSKR ISLIPFADFM NHDGLSASIV LRDEDNQLSE VTADRNYSPG DEVFIKYGEF SNATLMLDFG FTFPYNIHDE VQIQMDVPND
301: DPLRNMKLGL LQTHHTRTVK DINIFHSSCD TFTIKEVKSA IGKGKGIPQS LRAFARVLCC IIPQELNDLS KEAAQNDGRL ARLPFKDGNR ELEAHKILLS
401: HINRLIEDHS VCIKEMEECY FVSQRFAVRR QMARDLLYGE LRVLRSAAEW LNHYCTTLLS ETM
101: SDIRVLLSNE VGNIGMLAAV LIREKKMGQK SRWVPYISRL PQPAEMHSSI FWGEDELSMI RCSAVHQETV KQKAQIEKDF SFVAQAFKQH CPIVTERPDL
201: EDFMYAYALV GSRAWENSKR ISLIPFADFM NHDGLSASIV LRDEDNQLSE VTADRNYSPG DEVFIKYGEF SNATLMLDFG FTFPYNIHDE VQIQMDVPND
301: DPLRNMKLGL LQTHHTRTVK DINIFHSSCD TFTIKEVKSA IGKGKGIPQS LRAFARVLCC IIPQELNDLS KEAAQNDGRL ARLPFKDGNR ELEAHKILLS
401: HINRLIEDHS VCIKEMEECY FVSQRFAVRR QMARDLLYGE LRVLRSAAEW LNHYCTTLLS ETM
Arabidopsis Description
At3g55080 [Source:UniProtKB/TrEMBL;Acc:Q5PP40]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.