Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular, vacuole
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 5
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 5
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra040023.1-P | Field mustard | endoplasmic reticulum | 98.08 | 98.08 |
| CDX74033 | Canola | endoplasmic reticulum | 97.6 | 97.6 |
| Bra026865.1-P | Field mustard | plastid | 14.42 | 6.2 |
| Bra040022.1-P | Field mustard | plastid | 13.46 | 5.52 |
| Bra007135.1-P | Field mustard | cytosol, mitochondrion, plastid | 8.17 | 5.2 |
| Bra007140.1-P | Field mustard | mitochondrion | 10.58 | 4.93 |
| Bra008769.1-P | Field mustard | plastid | 11.54 | 4.65 |
| Bra023454.1-P | Field mustard | plastid | 11.06 | 4.55 |
| Solyc06g036670.1.1 | Tomato | cytosol | 4.33 | 4.04 |
| Bra028018.1-P | Field mustard | cytosol | 1.92 | 2.8 |
Protein Annotations
| EnsemblPlants:Bra029668.1 | EnsemblPlants:Bra029668.1-P | EnsemblPlantsGene:Bra029668 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:GOLD_dom | InterPro:IPR009038 | InterPro:TMP21-related | PANTHER:PTHR22811 | PANTHER:PTHR22811:SF50 | PFAM:PF01105 |
| PFscan:PS50866 | SignalP:SignalP-noTM | SMART:SM01190 | TMHMM:TMhelix | UniParc:UPI0001CA9855 | UniProt:M4ELK0 |
| MapMan:22.3.5.1 | : | : | : | : | : |
Description
AT3G07680 (E=3e-116) | emp24/gp25L/p24 family protein
Coordinates
chrA05:-:22727783..22728823
Molecular Weight (calculated)
24255.9 Da
IEP (calculated)
6.370
GRAVY (calculated)
-0.238
Length
208 amino acids
Sequence
(BLAST)
(BLAST)
001: MSMKATILIL GLVWSFQAAL GIRFVIDREE CFSHKAEYEG DTLHVSFVVI KSDSQWHFNE DGVDLVIHGP AGEQIHDFRE QISAKHDFVV QKKGVYRFCF
101: TNKSPYHETI DFDVQLGHFA YYDQHAKDEH FTPLMEQISK LEEALYNIQF EQHWLEAQTD RQAIVNENMS KRAVHKALFE SFALIGASVL QVYLLRRLFE
201: RKLGMSRV
101: TNKSPYHETI DFDVQLGHFA YYDQHAKDEH FTPLMEQISK LEEALYNIQF EQHWLEAQTD RQAIVNENMS KRAVHKALFE SFALIGASVL QVYLLRRLFE
201: RKLGMSRV
001: MSLKGTIVLL GLLWSFQATL GIRFVIDREE CFSHKAEYEG DTLHVSFVVI KSDSQWHFNE DGVDLVIHGP TGEQIHDFRE QISAKHDFVV QKKGVYRFCF
101: TNKSPYHETI DFDVQLGHFA YYDQHAKDEH FTPLMEQISK LEEALYNIQF EQHWLEAQTD RQAIVNENMS KRAVHKALFE SFALIGASFL QVYLLRRLFE
201: RKLGMSRV
101: TNKSPYHETI DFDVQLGHFA YYDQHAKDEH FTPLMEQISK LEEALYNIQF EQHWLEAQTD RQAIVNENMS KRAVHKALFE SFALIGASFL QVYLLRRLFE
201: RKLGMSRV
Arabidopsis Description
Transmembrane emp24 domain-containing protein p24beta2 [Source:UniProtKB/Swiss-Prot;Acc:Q9S7M9]
SUBAcon: [endoplasmic reticulum,extracellular]
SUBAcon: [endoplasmic reticulum,extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.