Factsheet for Bra007140.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 5
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY40200	Canola	mitochondrion	95.74	91.43
CDY40197	Canola	cytosol	34.3	90.0
AT3G55080.1	Thale cress	mitochondrion	75.78	73.0
Bra028018.1-P	Field mustard	cytosol	22.87	71.33
Bra007135.1-P	Field mustard	cytosol, mitochondrion, plastid	39.01	53.21
VIT_13s0067g03620.t01	Wine grape	cytosol	49.78	49.33
KRH36235	Soybean	mitochondrion	46.41	45.3
TraesCS3D01G544800.2	Wheat	mitochondrion	39.46	38.68
GSMUA_Achr11P...	Banana	mitochondrion	43.05	37.5
TraesCS3A01G539300.2	Wheat	mitochondrion	38.12	36.56
Solyc06g036700.1.1	Tomato	mitochondrion	14.8	32.51
Os01t0976450-00	Rice	mitochondrion	27.8	32.38
Bra040022.1-P	Field mustard	plastid	20.4	17.95
Bra026865.1-P	Field mustard	plastid	17.94	16.53
Bra023454.1-P	Field mustard	plastid	18.61	16.44
Bra008769.1-P	Field mustard	plastid	18.39	15.89
Bra040023.1-P	Field mustard	endoplasmic reticulum	5.38	11.54
Bra029668.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	4.93	10.58
TraesCS3B01G605100.1	Wheat	mitochondrion	28.7	10.26

Protein Annotations

EnsemblPlants:Bra007140.1	EnsemblPlants:Bra007140.1-P	EnsemblPlantsGene:Bra007140	Gene3D:3.90.1410.10	Gene3D:3.90.1420.10	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR001214	InterPro:IPR036464	InterPro:Rubisco_LSMT_subst-bd	InterPro:Rubisco_LSMT_subst-bd_sf
InterPro:SET_dom	PANTHER:PTHR13271	PANTHER:PTHR13271:SF11	PFAM:PF00856	PFAM:PF09273	PFscan:PS50280
SUPFAM:SSF82199	UniParc:UPI0002542A1F	UniProt:M4CSE8	MapMan:35.2	:	:

Description

AT3G55080 (E=2e-141) | SET domain-containing protein

Coordinates

chrA09:-:27519188..27522577

Molecular Weight (calculated)

50251.2 Da

IEP (calculated)

6.443

GRAVY (calculated)

-0.177

Length

446 amino acids

Sequence
(BLAST)

001: MLLSCPTVKL IVFQQRRTFT SSLAKRFSFN AQPLTESQAQ AALDKECIDF LPWLEQVAGA KITNTLSIGK SPYGRALFAS KVIHAGDCIL KVPFNAQITP
101: DELPTDIKVS LTDEVGNIGK LAALVMIEIN AGQIFWDENE FSMIRCSAVH KETVKQKARI EREFSLVSQA FKEHLTSAIE RPSLENFMYA YTLVGSRAWE
201: TSRGISLIPF ADFMNHDGLS ASIVLTDEGN QLSEVTADRD YSPGDEVLIR YGEFSNATLM LDFGFTLPYN THDEVQIQMD IPNDDPLRNM KLGLLQTHYT
301: RSVKDINIFH SSYDTFTIKE VKSATGKGIP QSLRAFARLL SCTSPQELND LSKEAEQNDG RLARLPFKDR SRELEAHKII LAHINSLIVD HSVCIKELGA
401: SNFRFESQRL TVRRQMAREL IFGELRVLRS AAEWLIHYCT NLFSAP

Best Arabidopsis Sequence Match ( AT3G55080.1 )
(BLAST)

001: MLFCISTVKL FGFQQRRNVS SLAKRFSLAG KLTLELQTQA SLDNNFLPWL ERIAGAKITN TLSIGKSTYG RSLFASKVIY AGDCMLKVPF NAQITPDELP
101: SDIRVLLSNE VGNIGMLAAV LIREKKMGQK SRWVPYISRL PQPAEMHSSI FWGEDELSMI RCSAVHQETV KQKAQIEKDF SFVAQAFKQH CPIVTERPDL
201: EDFMYAYALV GSRAWENSKR ISLIPFADFM NHDGLSASIV LRDEDNQLSE VTADRNYSPG DEVFIKYGEF SNATLMLDFG FTFPYNIHDE VQIQMDVPND
301: DPLRNMKLGL LQTHHTRTVK DINIFHSSCD TFTIKEVKSA IGKGKGIPQS LRAFARVLCC IIPQELNDLS KEAAQNDGRL ARLPFKDGNR ELEAHKILLS
401: HINRLIEDHS VCIKEMEECY FVSQRFAVRR QMARDLLYGE LRVLRSAAEW LNHYCTTLLS ETM

Arabidopsis Description

At3g55080 [Source:UniProtKB/TrEMBL;Acc:Q5PP40]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.