Factsheet for VIT_12s0057g01250.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_09s0002g02400.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G07670.1	VIT_09s0002g02400.t01	AT3G13720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g045310.2.1	Tomato	nucleus	75.05	74.45
KRH17729	Soybean	plastid	74.65	74.35
PGSC0003DMT400044855	Potato	plastid	75.25	74.21
AT3G07670.1	Thale cress	plastid	75.05	74.01
Bra040022.1-P	Field mustard	plastid	73.64	72.19
CDY22127	Canola	plastid	73.64	72.19
GSMUA_Achr3P10760_001	Banana	plastid	72.23	71.51
Os02t0725200-01	Rice	plasma membrane	70.42	69.72
EES07338	Sorghum	plastid	69.01	68.74
Zm00001d051668_P001	Maize	plastid	68.01	67.2
TraesCS6A01G286800.2	Wheat	plastid	66.6	65.67
TraesCS6B01G315800.1	Wheat	plastid	66.0	64.69
TraesCS6D01G267500.2	Wheat	plastid	65.79	64.37
HORVU6Hr1G072050.4	Barley	mitochondrion, plastid	66.0	62.84
Zm00001d051669_P002	Maize	plastid	63.18	61.45
Zm00001d034120_P001	Maize	cytosol	9.66	42.11
VIT_01s0182g00050.t01	Wine grape	plastid	21.73	22.31
VIT_14s0171g00310.t01	Wine grape	plastid	22.33	21.81
VIT_13s0067g03620.t01	Wine grape	cytosol	19.52	21.56

Protein Annotations

EntrezGene:100247772	wikigene:100247772	Gene3D:3.90.1410.10	Gene3D:3.90.1420.10	MapMan:50.2.1	ProteinID:CBI28466
ProteinID:CBI28466.3	UniProt:D7TD93	EMBL:FN595759	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016279
GO:GO:0016740	GO:GO:0018026	GO:GO:0019538	GO:GO:0030785	InterPro:IPR001214	InterPro:IPR011192
InterPro:IPR036464	EntrezGene:LOC100247772	wikigene:LOC100247772	PFAM:PF00856	PFAM:PF09273	PIRSF:PIRSF009328
PFscan:PS50280	PANTHER:PTHR13271	PANTHER:PTHR13271:SF81	InterPro:Rubisco_LSMT_MeTrfase_plant	InterPro:Rubisco_LSMT_subst-bd	InterPro:Rubisco_LSMT_subst-bd_sf
InterPro:SET_dom	SMART:SM00317	SUPFAM:SSF81822	SUPFAM:SSF82199	UniParc:UPI00019846AB	ArrayExpress:VIT_12s0057g01250
EnsemblPlantsGene:VIT_12s0057g01250	EnsemblPlants:VIT_12s0057g01250.t01	unigene:Vvi.10612	RefSeq:XP_002267469	RefSeq:XP_002267469.1	:

Description

No Description!

Coordinates

chr12:-:10000745..10005486

Molecular Weight (calculated)

57006.6 Da

IEP (calculated)

8.845

GRAVY (calculated)

-0.356

Length

497 amino acids

Sequence
(BLAST)

001: MAEACRMFHT ALTLTLPPSF SQTPSRHSQP IPRRHPIRCS ISTTDTAKTS VTQKIPWGCE VDSLENAALL QKWLSDSGLP PQKMGIERVE VGERGLVALK
101: NIRKGEKLLF VPPSLVITAD SEWSCTEAGE VLKRNSVPDW PLLATYLIGE ASFMQSSRWS NYISALPRQP YSLLYWTRAE LDKYLEASQI RERAIERIND
201: VTGTYNDLRL RIFSKHPHLF PEEVFNMETF KWSFGILFSR LVRLPSMDEK IALVPWADML NHSCEVETFL DYDKSSQGVV FTTDRTYQPS EQVFISYGKK
301: SNGELLLSYG FVPREGTNPN DKVELLLSLK KSDKCYKEKS EAMKKHGLST SQCFPIQITG WPLELMAYAY LVVSPPSMSQ HFEEIAAVAS NKTTSKKDIR
401: YPELEEQALQ FILDSCEASI SKYSKFLQES GSMDLDVTSP KQLNRRVFLK QLAVDLCTSE RRILFRTQYI LRRRLRDIRS GELRALRIFD GFRKLFK

Best Arabidopsis Sequence Match ( AT3G07670.1 )
(BLAST)

001: MAKACLLQST LLPAYSPLHK LRNQNITLSF SPLPLSRCRP GIHCSVSAGE TTIQSMEEAP KISWGCEIDS LENATSLQNW LSDSGLPPQK MAIDRVDIGE
101: RGLVASQNLR KGEKLLFVPP SLVISADSEW TNAEAGEVMK RYDVPDWPLL ATYLISEASL QKSSRWFNYI SALPRQPYSL LYWTRTELDM YLEASQIRER
201: AIERITNVVG TYEDLRSRIF SKHPQLFPKE VFNDETFKWS FGILFSRLVR LPSMDGRFAL VPWADMLNHN CEVETFLDYD KSSKGVVFTT DRPYQPGEQV
301: FISYGNKSNG ELLLSYGFVP REGTNPSDSV ELALSLRKND KCYEEKLDAL KKHGLSTPQC FPVRITGWPM ELMAYAYLVV SPPDMRNNFE EMAKAASNKT
401: STKNDLKYPE IEEDALQFIL DSCETSISKY SRFLKESGSM DLDITSPKQL NRKAFLKQLA VDLSTSERRI LYRAQYILRR RLRDIRSGEL KALRLFSGLR
501: NFFK

Arabidopsis Description

Putative ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit N-methyltransferase I [Source:UniProtKB/TrEMBL;Acc:Q9S7D2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.