Factsheet for VIT_09s0002g02400.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 3
vacuole 3
plasma membrane 2
extracellular 1
endoplasmic reticulum 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	vacuole
Plant-mPloc:	plasma membrane
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	vacuole
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_04s0008g07400.t01
VIT_06s0080g00970.t01
VIT_07s0031g00020.t01
VIT_08s0007g04670.t01
VIT_09s0002g02400.t01
VIT_10s0003g04580.t01
VIT_11s0052g00220.t01
VIT_11s0052g00230.t01
VIT_11s0052g00240.t01
VIT_11s0052g00260.t01
VIT_11s0052g00280.t01
VIT_11s0078g00180.t01
VIT_12s0028g00830.t01
VIT_12s0059g01810.t01
VIT_14s0006g01090.t01
VIT_14s0060g01340.t01
VIT_16s0013g00170.t01
VIT_16s0013g01410.t01
VIT_16s0050g01050.t01
VIT_18s0001g05960.t01
VIT_19s0090g01190.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G55190.1	VIT_18s0001g05960.t01	AT1G71480.1	21798944
AT1G55190.1	VIT_10s0003g04580.t01	AT2G34690.1	18845362
AT1G55190.1	VIT_11s0052g00220.t01	AT2G34690.1	18845362
AT1G55190.1	VIT_11s0052g00230.t01	AT2G34690.1	18845362
AT1G55190.1	VIT_11s0052g00240.t01	AT2G34690.1	18845362
AT1G55190.1	VIT_11s0052g00260.t01	AT2G34690.1	18845362
AT1G55190.1	VIT_11s0052g00280.t01	AT2G34690.1	18845362
AT1G55190.1	VIT_16s0050g01050.t01	AT4G25680.1	21798944
AT1G55190.1	VIT_04s0008g07400.t01	AT5G10730.1	21798944
AT1G55190.1	VIT_16s0013g01410.t01	AT5G51180.1	21798944
AT3G13710.1	VIT_14s0060g01340.t01	AT1G09180.1	21798944
AT3G13710.1	VIT_16s0013g00170.t01	AT1G09180.1	21798944
AT3G13710.1	VIT_08s0007g04670.t01	AT3G53180.1	21798944
AT3G13710.1	VIT_14s0060g01340.t01	AT4G02080.1	21798944
AT3G13710.1	VIT_16s0013g00170.t01	AT4G02080.1	21798944
AT3G13710.1	VIT_06s0080g00970.t01	AT5G22290.1	21798944
AT3G13720.1	VIT_12s0059g01810.t01	AT1G03600.1	21798944
AT3G13720.1	VIT_09s0002g02400.t01	AT1G55190.1	21798944
AT3G13720.1	VIT_18s0001g05960.t01	AT1G71480.1	21798944
AT3G13720.1	VIT_12s0028g00830.t01	AT2G30880.1	21798944
AT3G13720.1	VIT_10s0003g04580.t01	AT2G34690.1	18845362
AT3G13720.1	VIT_11s0052g00220.t01	AT2G34690.1	18845362
AT3G13720.1	VIT_11s0052g00230.t01	AT2G34690.1	18845362
AT3G13720.1	VIT_11s0052g00240.t01	AT2G34690.1	18845362
AT3G13720.1	VIT_11s0052g00260.t01	AT2G34690.1	18845362
AT3G13720.1	VIT_11s0052g00280.t01	AT2G34690.1	18845362
AT3G13720.1	VIT_09s0002g02400.t01	AT3G13720.1	21798944
AT3G13720.1	VIT_07s0031g00020.t01	AT3G50110.1	21798944
AT3G13720.1	VIT_16s0050g01050.t01	AT4G25660.1	21798944
AT3G13720.1	VIT_16s0050g01050.t01	AT4G25680.1	21798944
AT3G13720.1	VIT_11s0078g00180.t01	AT5G09450.1	21798944
AT3G13720.1	VIT_14s0006g01090.t01	AT5G37680.1	21798944
AT3G13720.1	VIT_19s0090g01190.t01	AT5G55200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400006409	Potato	plasma membrane	64.25	68.13
Solyc03g121460.1.1	Tomato	plastid	63.73	67.58
KRH10001	Soybean	mitochondrion	63.73	66.85
KRH23330	Soybean	plastid	63.73	66.85
KRH47141	Soybean	plasma membrane	57.51	62.36
KRH44167	Soybean	plasma membrane	56.48	61.93
AT1G55190.1	Thale cress	plasma membrane	60.1	61.38
VIT_11s0016g02330.t01	Wine grape	plastid	56.99	58.2
GSMUA_Achr7P09070_001	Banana	plastid	55.96	57.45
CDY33064	Canola	cytosol, plasma membrane, plastid	55.44	57.22
CDY24050	Canola	cytosol, plasma membrane, plastid	55.44	57.22
AT3G13720.1	Thale cress	cytosol, plasma membrane, plastid	54.92	56.38
CDY26125	Canola	cytosol, plasma membrane, plastid	54.92	56.08
Bra037983.1-P	Field mustard	extracellular, plasma membrane	40.41	55.71
Bra014355.1-P	Field mustard	cytosol, plasma membrane, plastid	52.85	53.97
CDY08228	Canola	plasma membrane	52.85	53.97
AT3G13710.1	Thale cress	plasma membrane	51.81	53.19
Zm00001d039455_P002	Maize	extracellular, mitochondrion	52.85	52.85
TraesCS3B01G122600.1	Wheat	plastid	51.81	52.63
TraesCS3D01G106500.1	Wheat	plastid	51.81	52.63
EES00126	Sorghum	plastid	52.33	52.6
CDY23634	Canola	plasma membrane	49.22	52.49
CDX97509	Canola	plasma membrane	49.22	52.49
TraesCS3A01G104300.1	Wheat	plastid	51.81	52.36
Bra027406.1-P	Field mustard	plasma membrane	48.19	51.38
CDY26225	Canola	plasma membrane	47.67	50.0
Os01t0196500-01	Rice	plastid	51.81	49.75
Os05t0200280-01	Rice	plasma membrane	49.74	49.74
CDX81845	Canola	plasma membrane	46.63	49.72
VIT_07s0141g00630.t01	Wine grape	plastid	48.19	49.47
Bra025954.1-P	Field mustard	plasma membrane	47.15	49.46
CDY51735	Canola	plasma membrane	46.63	49.45
CDY37483	Canola	plasma membrane	46.63	49.45
Bra021504.1-P	Field mustard	endoplasmic reticulum, peroxisome, plasma membrane	46.63	49.45
TraesCS1D01G130300.1	Wheat	plastid	48.7	49.21
Bra031001.1-P	Field mustard	plasma membrane	46.11	49.17
TraesCS1B01G143000.1	Wheat	plastid	48.19	48.44
CDY59501	Canola	plasma membrane	46.11	48.37
TraesCS1A01G124100.1	Wheat	plastid	47.67	48.17
AT1G17700.1	Thale cress	plasma membrane	44.56	47.78
VIT_14s0081g00090.t01	Wine grape	plastid	50.78	47.57
Zm00001d037747_P001	Maize	plastid	44.56	45.74
OQU77594	Sorghum	plastid	46.11	45.41
VIT_05s0020g04740.t01	Wine grape	plastid	44.56	45.03
HORVU1Hr1G028520.1	Barley	plastid	49.22	43.98
HORVU3Hr1G018940.2	Barley	plastid	52.85	40.0
CDY37482	Canola	plastid	39.38	36.36
Bra021503.1-P	Field mustard	plastid	38.86	36.06
CDY51734	Canola	plastid	38.86	35.89
CDY55133	Canola	plasma membrane	35.75	32.39
CDY51733	Canola	plastid	34.72	31.31
Bra021502.1-P	Field mustard	plastid	34.72	31.31

Protein Annotations

EntrezGene:100258362	wikigene:100258362	MapMan:22.8.4.3.2	ProteinID:CCB59353	ProteinID:CCB59353.1	UniProt:F6HY30
EMBL:FN596494	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783
GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016192	EntrezGene:LOC100258362
wikigene:LOC100258362	PFAM:PF03208	PANTHER:PTHR19317	PANTHER:PTHR19317:SF2	InterPro:Prenylated_rab_accept_PRA1	TIGR:TC56831
TMHMM:TMhelix	UniParc:UPI0001983E50	ArrayExpress:VIT_09s0002g02400	EnsemblPlantsGene:VIT_09s0002g02400	EnsemblPlants:VIT_09s0002g02400.t01	unigene:Vvi.13013
RefSeq:XP_002279772	RefSeq:XP_002279772.1	SEG:seg	:	:	:

Description

PRA1 family protein [Source:UniProtKB/TrEMBL;Acc:F6HY30]

Coordinates

chr9:+:2176985..2177879

Molecular Weight (calculated)

21474.8 Da

IEP (calculated)

9.658

GRAVY (calculated)

0.741

Length

193 amino acids

Sequence
(BLAST)

001: MTTYGTIPTS SAGDSPSLEF VSRAKERLRS GLATRRPWKE MFNIRSIGLP INFPDAVNRV KTNISFFRMN YVIIVLLILF LSLLWHPISL IVFIVMMAVW
101: LFLYFLRDEP LVVFHRTIDD RVVLIVLLIL TIVFLLLTHA TLNILVSLLI GVAVVVLHAA FRKTDDLFLD EEAASAGGLL TTPGSTAGPS SSS

Best Arabidopsis Sequence Match ( AT1G55190.1 )
(BLAST)

001: MTNYGAIPTS SHPSPAIDLE YISRAKHRIK SGLATRRPWK SMFDFESMTL PHGFFDAISR IKTNLGYFRA NYAIGVLFIL FLSLLYHPTS LIVLSILVVF
101: WIFLYFLRDE PLVVFGYQID DRTVLIGLSV LTVVMLLLTH ATSNILGSLL TAAVLVLIHA AVRRSDNLFL DEEAAAVTEA SGLMSYPSS

Arabidopsis Description

PRA1F2PRA1 family protein F2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C889]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.