Factsheet for VIT_05s0020g04740.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
endoplasmic reticulum 2
plasma membrane 3
extracellular 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plasma membrane
Predotar:	plastid
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_07s0141g00630.t01	Wine grape	plastid	50.26	51.06
VIT_14s0081g00090.t01	Wine grape	plastid	52.88	49.03
VIT_09s0002g02400.t01	Wine grape	plastid	45.03	44.56
VIT_11s0016g02330.t01	Wine grape	plastid	43.98	44.44

Protein Annotations

EntrezGene:100266602	wikigene:100266602	MapMan:22.8.4.3.2	EMBL:AM441925	ProteinID:CAN60779	ProteinID:CAN60779.1
ProteinID:CCB50498	ProteinID:CCB50498.1	UniProt:F6HDY3	EMBL:FN595749	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	EntrezGene:LOC100266602	wikigene:LOC100266602	PFAM:PF03208	PANTHER:PTHR19317	PANTHER:PTHR19317:SF33
InterPro:Prenylated_rab_accept_PRA1	TMHMM:TMhelix	UniParc:UPI00019833C8	ArrayExpress:VIT_05s0020g04740	EnsemblPlantsGene:VIT_05s0020g04740	EnsemblPlants:VIT_05s0020g04740.t01
unigene:Vvi.22551	RefSeq:XP_002284210	RefSeq:XP_002284210.1	SEG:seg	:	:

Description

PRA1 family protein [Source:UniProtKB/TrEMBL;Acc:F6HDY3]

Coordinates

chr5:-:6605373..6606181

Molecular Weight (calculated)

20994.8 Da

IEP (calculated)

6.779

GRAVY (calculated)

0.795

Length

191 amino acids

Sequence
(BLAST)

001: MSSASPYGYM SPPSTSAAGF LSTAREKTQS VMAGCRPWGE LLDLSALSLP FSLGEATARI KRSLAYFRVN YTLIVLLVLF VSLLWHPISM IVFLVVFVAW
101: LFLYFLRDDP VLIFNRIVDD RVVLVGVAAV TIVALVLTHV WLNVFVSLVI GSFLVCLHGA FRASDNLDDQ ESPYGALLTV VDSPRGSYSL V

Best Arabidopsis Sequence Match ( AT1G08770.1 )
(BLAST)

001: MNQKPPPYGY GGAGGGGVGP SSTSNTTIIG TLSARAKQTT QSMITTLRPW REILDLSALS LPRGYDEAMA HLKHNISYFR GNYALAVLAI VFLGLIYHPM
101: SMIAFIVVFI GWILLYFSRD ANDSIVISGK EVDDKIVLVL LSLVTVLALV YTDVGENVLV SLIIGLLIVG AHGAFRNTDD LFLDEESARR GGLVSAGSGN
201: RPPSSYTPI

Arabidopsis Description

PRA1EPRA1 family protein [Source:UniProtKB/TrEMBL;Acc:A0A178W4Z3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.