Factsheet for VIT_11s0016g02330.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
plasma membrane 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Plant-mPloc:	plasma membrane
Predotar:	plastid
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_09s0002g02400.t01	Wine grape	plastid	58.2	56.99
GSMUA_Achr7P09070_001	Banana	plastid	52.91	53.19
KRH49060	Soybean	plasma membrane	49.21	46.97
Zm00001d039455_P002	Maize	extracellular, mitochondrion	47.62	46.63
KRH74153	Soybean	endoplasmic reticulum, peroxisome, plasma membrane	48.15	45.5
EES00126	Sorghum	plastid	44.97	44.27
Bra011125.1-P	Field mustard	mitochondrion	40.74	44.0
VIT_05s0020g04740.t01	Wine grape	plastid	44.44	43.98
CDY06788	Canola	plastid	44.97	43.81
TraesCS3D01G106500.1	Wheat	plastid	43.92	43.68
TraesCS3B01G122600.1	Wheat	plastid	43.92	43.68
CDY43514	Canola	mitochondrion	40.21	43.43
VIT_14s0081g00090.t01	Wine grape	plastid	47.09	43.2
Os05t0200280-01	Rice	plasma membrane	43.92	43.01
TraesCS3A01G104300.1	Wheat	plastid	43.39	42.93
AT4G29658.2	Thale cress	plastid	42.86	42.63
VIT_07s0141g00630.t01	Wine grape	plastid	41.8	42.02
Zm00001d037747_P001	Maize	plastid	41.8	42.02
TraesCS1D01G130300.1	Wheat	plastid	42.33	41.88
TraesCS1A01G124100.1	Wheat	plastid	42.33	41.88
Os01t0196500-01	Rice	plastid	43.92	41.29
TraesCS1B01G143000.1	Wheat	plastid	41.8	41.15
OQU77594	Sorghum	plastid	42.33	40.82
HORVU1Hr1G028520.1	Barley	plastid	42.33	37.04
HORVU3Hr1G018940.2	Barley	plastid	46.56	34.51

Protein Annotations

EntrezGene:100854448	wikigene:100854448	MapMan:22.8.4.3.2	ProteinID:CCB51452	ProteinID:CCB51452.1	UniProt:F6HGQ8
EMBL:FN595756	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	EntrezGene:LOC100854448	wikigene:LOC100854448
PFAM:PF03208	PANTHER:PTHR19317	PANTHER:PTHR19317:SF2	InterPro:Prenylated_rab_accept_PRA1	TMHMM:TMhelix	UniParc:UPI00015C8A39
ArrayExpress:VIT_11s0016g02330	EnsemblPlantsGene:VIT_11s0016g02330	EnsemblPlants:VIT_11s0016g02330.t01	RefSeq:XP_003633114	RefSeq:XP_003633114.1	SEG:seg

Description

PRA1 family protein [Source:UniProtKB/TrEMBL;Acc:F6HGQ8]

Coordinates

chr11:+:1884821..1885809

Molecular Weight (calculated)

21081.3 Da

IEP (calculated)

10.137

GRAVY (calculated)

0.767

Length

189 amino acids

Sequence
(BLAST)

001: MTTYGTIPAG TPVSPSLGYI SFARERIRSS LGTRRPWKEM VQLRSLSIPA NAAEAFQRIK TNAAYFRMNY VIVILFILFL SLLWHPISLI VFVVTMAAWL
101: FLYFLRDGPV VILGRSIDDR VVMVILAVVT IVLLFLTDVT INILVSLLIG VVVVLTHSVV RMTEDLFVDG EDGARLRLRD AASSSFSTT

Best Arabidopsis Sequence Match ( AT1G55190.1 )
(BLAST)

001: MTNYGAIPTS SHPSPAIDLE YISRAKHRIK SGLATRRPWK SMFDFESMTL PHGFFDAISR IKTNLGYFRA NYAIGVLFIL FLSLLYHPTS LIVLSILVVF
101: WIFLYFLRDE PLVVFGYQID DRTVLIGLSV LTVVMLLLTH ATSNILGSLL TAAVLVLIHA AVRRSDNLFL DEEAAAVTEA SGLMSYPSS

Arabidopsis Description

PRA1F2PRA1 family protein F2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C889]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.