Factsheet for VIT_14s0081g00090.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1
vacuole 2
plasma membrane 2
extracellular 1
endoplasmic reticulum 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	vacuole
Plant-mPloc:	plasma membrane
Predotar:	plastid
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH34097	Soybean	plastid	55.83	60.53
KRG92690	Soybean	plastid	55.83	59.9
VIT_07s0141g00630.t01	Wine grape	plastid	53.88	59.04
GSMUA_Achr7P07600_001	Banana	plastid	57.77	57.49
VIT_05s0020g04740.t01	Wine grape	plastid	49.03	52.88
PGSC0003DMT400050026	Potato	plastid	53.4	51.16
VIT_09s0002g02400.t01	Wine grape	plastid	47.57	50.78
AT1G08770.1	Thale cress	plastid	49.03	48.33
VIT_11s0016g02330.t01	Wine grape	plastid	43.2	47.09
CDX93539	Canola	plastid	47.09	46.63
Bra018602.1-P	Field mustard	plastid	46.6	46.15
Solyc01g097230.2.1	Tomato	plastid	35.44	45.34
CDX95035	Canola	plastid	45.63	45.19
Zm00001d013069_P001	Maize	plastid	39.32	35.84
EER90731	Sorghum	plastid	38.84	35.71
TraesCS5B01G447900.1	Wheat	plastid	39.81	35.34
TraesCS5A01G443300.1	Wheat	plastid	39.32	34.76
TraesCS5D01G450800.1	Wheat	plastid	38.84	34.33
Zm00001d034469_P001	Maize	plastid	36.89	33.48
Os03t0798400-01	Rice	plasma membrane	37.38	33.48
HORVU5Hr1G106520.1	Barley	cytosol	33.98	29.91

Protein Annotations

EntrezGene:100248504	wikigene:100248504	MapMan:22.8.4.3.2	EMBL:AM438101	ProteinID:CAN73850	ProteinID:CAN73850.1
ProteinID:CCB58727	ProteinID:CCB58727.1	UniProt:F6HVL4	EMBL:FN596256	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	EntrezGene:LOC100248504	wikigene:LOC100248504	PFAM:PF03208	PANTHER:PTHR19317	PANTHER:PTHR19317:SF16
InterPro:Prenylated_rab_accept_PRA1	TIGR:TC64993	TMHMM:TMhelix	UniParc:UPI00015CCE7F	ArrayExpress:VIT_14s0081g00090	EnsemblPlantsGene:VIT_14s0081g00090
EnsemblPlants:VIT_14s0081g00090.t01	unigene:Vvi.23796	RefSeq:XP_002264376	RefSeq:XP_002264376.1	RefSeq:XP_010660142.1	SEG:seg

Description

PRA1 family protein [Source:UniProtKB/TrEMBL;Acc:F6HVL4]

Coordinates

chr14:-:7639197..7640594

Molecular Weight (calculated)

23174.4 Da

IEP (calculated)

9.358

GRAVY (calculated)

0.475

Length

206 amino acids

Sequence
(BLAST)

001: MSLKSPAGYG TLPNASAAVP SSSTSEQFTF ISRATQRTQT LMATRRPWRE FLDYSVLSRP HNYSDAMARI KRNVNYFRVN YAMVMLFILF VSLLWHPTSM
101: IVFLIIFVAW FFLYFFRDNP VVLFHQTIDD RVVLVLLGLI TVVALVFTDV GLNVLVSLII GVAVVGLHAA FRGTEDLFLN EEEVAEGGLL SVAGGQQLRP
201: TNYTRV

Best Arabidopsis Sequence Match ( AT1G08770.1 )
(BLAST)

001: MNQKPPPYGY GGAGGGGVGP SSTSNTTIIG TLSARAKQTT QSMITTLRPW REILDLSALS LPRGYDEAMA HLKHNISYFR GNYALAVLAI VFLGLIYHPM
101: SMIAFIVVFI GWILLYFSRD ANDSIVISGK EVDDKIVLVL LSLVTVLALV YTDVGENVLV SLIIGLLIVG AHGAFRNTDD LFLDEESARR GGLVSAGSGN
201: RPPSSYTPI

Arabidopsis Description

PRA1EPRA1 family protein [Source:UniProtKB/TrEMBL;Acc:A0A178W4Z3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.