Factsheet for PGSC0003DMT400050026

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
cytosol 1
mitochondrion 1
plasma membrane 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion, plasma membrane
Predotar:	plastid
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g097230.2.1	Tomato	plastid	70.23	93.79
VIT_14s0081g00090.t01	Wine grape	plastid	51.16	53.4
KRG92690	Soybean	plastid	45.58	51.04
PGSC0003DMT400038994	Potato	mitochondrion, plastid	41.4	50.57
KRH34097	Soybean	plastid	43.26	48.95
GSMUA_Achr7P07600_001	Banana	plastid	44.65	46.38
AT1G08770.1	Thale cress	plastid	41.4	42.58
Bra018602.1-P	Field mustard	plastid	40.93	42.31
CDX93539	Canola	plastid	40.93	42.31
PGSC0003DMT400006409	Potato	plasma membrane	35.35	41.76
CDX95035	Canola	plastid	39.53	40.87
PGSC0003DMT400015659	Potato	plasma membrane	29.77	38.1
Zm00001d013069_P001	Maize	plastid	38.6	36.73
EER90731	Sorghum	plastid	37.67	36.16
PGSC0003DMT400061546	Potato	plastid	35.35	34.86
Zm00001d034469_P001	Maize	plastid	36.74	34.8
Os03t0798400-01	Rice	plasma membrane	37.21	34.78
TraesCS5A01G443300.1	Wheat	plastid	36.74	33.91
TraesCS5D01G450800.1	Wheat	plastid	36.28	33.48
TraesCS5B01G447900.1	Wheat	plastid	35.81	33.19
PGSC0003DMT400034320	Potato	plastid	30.23	30.66
PGSC0003DMT400056954	Potato	plasma membrane	26.05	29.95
PGSC0003DMT400041063	Potato	plastid	31.63	29.82
HORVU5Hr1G106520.1	Barley	cytosol	31.63	29.06

Protein Annotations

EntrezGene:102580733	MapMan:22.8.4.3.2	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005783	GO:GO:0005794	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021
GO:GO:0016192	UniProt:M1BPP9	PFAM:PF03208	EnsemblPlantsGene:PGSC0003DMG400019438	PGSC:PGSC0003DMG400019438	EnsemblPlants:PGSC0003DMT400050026
PANTHER:PTHR19317	PANTHER:PTHR19317:SF16	InterPro:Prenylated_rab_accept_PRA1	TMHMM:TMhelix	UniParc:UPI0002964A11	RefSeq:XP_015164400.1
SEG:seg	:	:	:	:	:

Description

Prenylated Rab acceptor protein [Source:PGSC_GENE;Acc:PGSC0003DMG400019438]

Coordinates

chr1:-:74978704..74980951

Molecular Weight (calculated)

23991.3 Da

IEP (calculated)

9.221

GRAVY (calculated)

0.247

Length

215 amino acids

Sequence
(BLAST)

001: MAISANLSNY GTLPTSTPPE SPQTTPHSAR KPPRPPLPRP PQPQPPRPST VTRSDTATRR SWRVFFDYTI ISLPYNYSEA IIRVRRNLNY FRVNYAMVIL
101: VILFLSLVYH PISMIVFLAI SVAWLYYFRE EAIVISGTQL DDRLVLVGLG LVTVVALALT HVGLNVLVAL IIGFFVLGIH GALRGTEDLF LDENEAAEGG
201: LLSVVSEEQI RPSYR

Best Arabidopsis Sequence Match ( AT1G08770.1 )
(BLAST)

001: MNQKPPPYGY GGAGGGGVGP SSTSNTTIIG TLSARAKQTT QSMITTLRPW REILDLSALS LPRGYDEAMA HLKHNISYFR GNYALAVLAI VFLGLIYHPM
101: SMIAFIVVFI GWILLYFSRD ANDSIVISGK EVDDKIVLVL LSLVTVLALV YTDVGENVLV SLIIGLLIVG AHGAFRNTDD LFLDEESARR GGLVSAGSGN
201: RPPSSYTPI

Arabidopsis Description

PRA1EPRA1 family protein [Source:UniProtKB/TrEMBL;Acc:A0A178W4Z3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.