Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 7
- peroxisome 1
- plasma membrane 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400041063 | Potato | plastid | 79.25 | 73.68 |
| KRG93818 | Soybean | extracellular, plasma membrane, vacuole | 24.53 | 61.9 |
| KRH76033 | Soybean | endoplasmic reticulum | 62.26 | 60.27 |
| PGSC0003DMT400061546 | Potato | plastid | 61.32 | 59.63 |
| Bra000056.1-P | Field mustard | plastid | 62.26 | 59.46 |
| CDY07736 | Canola | plastid | 61.79 | 59.01 |
| AT2G38360.1 | Thale cress | plastid | 60.85 | 58.64 |
| KRH65569 | Soybean | plastid | 62.26 | 58.15 |
| CDY63156 | Canola | plastid | 59.43 | 57.8 |
| GSMUA_Achr5P07440_001 | Banana | plastid | 54.72 | 53.95 |
| GSMUA_Achr4P18690_001 | Banana | plastid | 56.13 | 53.85 |
| CDX80758 | Canola | plastid | 54.25 | 53.74 |
| GSMUA_Achr3P10010_001 | Banana | plastid | 54.72 | 53.7 |
| GSMUA_Achr5P14320_001 | Banana | plastid | 47.17 | 53.48 |
| AT4G00005.1 | Thale cress | extracellular, plasma membrane | 29.72 | 53.39 |
| GSMUA_Achr10P... | Banana | plastid | 45.75 | 53.3 |
| Bra005112.1-P | Field mustard | plastid | 41.98 | 52.98 |
| GSMUA_Achr7P22310_001 | Banana | plastid | 46.7 | 52.66 |
| AT5G01640.1 | Thale cress | plastid | 54.72 | 52.02 |
| CDY54457 | Canola | endoplasmic reticulum, peroxisome, plasma membrane | 42.92 | 50.0 |
| Os01t0827400-01 | Rice | extracellular, mitochondrion, plasma membrane | 33.96 | 49.66 |
| Zm00001d010603_P002 | Maize | mitochondrion | 50.47 | 49.31 |
| Os12t0107600-00 | Rice | plastid | 50.47 | 48.64 |
| Os11t0107600-01 | Rice | plastid | 50.47 | 48.64 |
| CDY61529 | Canola | plastid | 28.77 | 48.41 |
| KXG22202 | Sorghum | plastid | 49.53 | 48.39 |
| Os05t0474400-01 | Rice | plasma membrane, vacuole | 50.0 | 48.18 |
| TraesCS4B01G137300.1 | Wheat | plastid | 50.47 | 47.14 |
| TraesCS3B01G380000.1 | Wheat | plastid | 47.17 | 46.95 |
| KRH32827 | Soybean | plastid | 50.0 | 46.9 |
| TraesCS3A01G348100.1 | Wheat | plastid | 46.7 | 46.7 |
| TraesCS4D01G132000.1 | Wheat | plastid | 50.0 | 46.7 |
| KRH49465 | Soybean | plastid | 49.06 | 46.64 |
| EES03822 | Sorghum | plastid | 49.06 | 46.64 |
| TraesCS1A01G297900.1 | Wheat | plastid | 48.58 | 46.61 |
| TraesCS1D01G293300.1 | Wheat | plastid | 48.58 | 46.61 |
| TraesCS3D01G341700.1 | Wheat | plastid | 48.58 | 46.61 |
| Zm00001d043018_P001 | Maize | mitochondrion | 48.11 | 46.36 |
| TraesCS1B01G307400.1 | Wheat | golgi, unclear | 48.11 | 46.36 |
| KRH00333 | Soybean | plastid | 49.53 | 46.26 |
| TraesCS4A01G180500.1 | Wheat | plastid | 49.53 | 46.05 |
| HORVU4Hr1G024530.1 | Barley | plastid | 49.06 | 46.02 |
| HORVU1Hr1G070360.1 | Barley | plastid | 48.11 | 45.95 |
| HORVU3Hr1G088130.1 | Barley | plastid | 46.7 | 45.0 |
| Zm00001d052322_P001 | Maize | plastid | 38.21 | 42.86 |
| OQU82692 | Sorghum | plastid | 45.28 | 42.86 |
| TraesCS5A01G151600.1 | Wheat | plastid | 44.34 | 41.59 |
| TraesCS5B01G150200.1 | Wheat | plastid | 44.34 | 41.59 |
| EES15518 | Sorghum | plastid | 45.28 | 41.2 |
| TraesCS5D01G156800.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 43.87 | 41.15 |
| HORVU2Hr1G086930.1 | Barley | cytosol, plastid | 20.75 | 39.29 |
| PGSC0003DMT400006409 | Potato | plasma membrane | 32.55 | 37.91 |
| KXG38626 | Sorghum | golgi, plasma membrane, plastid | 33.02 | 37.84 |
| HORVU5Hr1G047520.1 | Barley | endoplasmic reticulum, plastid | 42.92 | 37.6 |
| PGSC0003DMT400038994 | Potato | mitochondrion, plastid | 30.19 | 36.36 |
| PGSC0003DMT400015659 | Potato | plasma membrane | 25.47 | 32.14 |
| PGSC0003DMT400056954 | Potato | plasma membrane | 27.36 | 31.02 |
| PGSC0003DMT400050026 | Potato | plastid | 30.66 | 30.23 |
| OQU79263 | Sorghum | plastid | 23.11 | 29.7 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400034320 | EnsemblPlantsGene:PGSC0003DMG400013196 | EntrezGene:102591405 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:Prenylated_rab_accept_PRA1 | PANTHER:PTHR19317 | PANTHER:PTHR19317:SF34 | PFAM:PF03208 | PGSC:PGSC0003DMG400013196 | RefSeq:XP_006360827.1 |
| SEG:seg | TMHMM:TMhelix | UniParc:UPI000294C025 | UniProt:M1B0H1 | MapMan:22.8.4.3.2 | : |
Description
Prenylated Rab acceptor protein [Source:PGSC_GENE;Acc:PGSC0003DMG400013196]
Coordinates
chr9:-:11226001..11227206
Molecular Weight (calculated)
22895.9 Da
IEP (calculated)
8.478
GRAVY (calculated)
0.553
Length
212 amino acids
Sequence
(BLAST)
(BLAST)
001: MASPAILPIT SQPTAADTTQ QIGPTPAFRS FINHISTTVQ TGFANRRPWS ELLDRSAFSK PESISDATLR IRKNYTYFRI NYLSLLAVVL AFSLLTNPFS
101: LLTLSGLLAA WLFLYLFRPS DPPLVLFGRQ FSERETLGLL IVSTVVVIFL TSVGAVLVSA LMVGLGIVCI HAAFRAPEDL FLDDQESPAT GFLSFLSSGA
201: ANAVAPAVAA RV
101: LLTLSGLLAA WLFLYLFRPS DPPLVLFGRQ FSERETLGLL IVSTVVVIFL TSVGAVLVSA LMVGLGIVCI HAAFRAPEDL FLDDQESPAT GFLSFLSSGA
201: ANAVAPAVAA RV
001: MASSAPPVLP ISNPQTVPSA APSSVESQPP IATPAFRNFI NQITETVKNG LSKRRPWAEL ADRSALSKPE SISDAAVRIR KNYSYFKVNY LTVATAIVGF
101: SLVTHPFSLV FLLCLLASWL FLYLFRPTDQ PIVLFGRTFS DRETLGCLIL FSIFVIFLTD VGSVLVSAMM IGVALICAHG AFRAPEDLFL DEQEPAATGF
201: LSFLGGAASS AAPAVIAARV
101: SLVTHPFSLV FLLCLLASWL FLYLFRPTDQ PIVLFGRTFS DRETLGCLIL FSIFVIFLTD VGSVLVSAMM IGVALICAHG AFRAPEDLFL DEQEPAATGF
201: LSFLGGAASS AAPAVIAARV
Arabidopsis Description
PRA1B4PRA1 family protein B4 [Source:UniProtKB/Swiss-Prot;Acc:O80915]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.