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Barley
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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 8
  • cytosol 1
  • plasma membrane 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, plasma membrane, plastid
BaCelLo:plastid
ChloroP:plastid
iPSORT:plastid
MultiLoc:cytosol
Plant-mPloc:plasma membrane
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:plastid
PPI

Inferred distinct locusB in Crop

locusBlocations
HORVU1Hr1G070360.1
HORVU1Hr1G072070.1
HORVU1Hr1G082010.3
HORVU2Hr1G086930.1
HORVU3Hr1G030760.2
HORVU3Hr1G069970.2
HORVU3Hr1G086830.7
HORVU3Hr1G088130.1
HORVU4Hr1G024530.1
HORVU4Hr1G074140.2
HORVU5Hr1G047520.1
HORVU5Hr1G112790.2
HORVU7Hr1G002080.2
HORVU7Hr1G075700.2
HORVU7Hr1G081290.4

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G38360.1 HORVU1Hr1G072070.1 AT3G46060.1 21798944
AT2G38360.1 HORVU3Hr1G086830.7 AT3G46060.1 21798944
AT2G38360.1 HORVU5Hr1G112790.2 AT3G46060.1 21798944
AT5G01640.1 HORVU7Hr1G002080.2 AT4G25660.1 21798944
AT5G01640.1 HORVU1Hr1G070360.1 AT5G01640.1 21798944
AT5G01640.1 HORVU2Hr1G086930.1 AT5G01640.1 21798944
AT5G01640.1 HORVU3Hr1G088130.1 AT5G01640.1 21798944
AT5G01640.1 HORVU4Hr1G024530.1 AT5G01640.1 21798944
AT5G01640.1 HORVU5Hr1G047520.1 AT5G01640.1 21798944
AT5G01640.1 HORVU4Hr1G074140.2 AT5G12390.1 21798944
AT5G01640.1 HORVU1Hr1G082010.3 AT5G41600.1 21798944
AT5G01640.1 HORVU3Hr1G030760.2 AT5G41600.1 21798944
AT5G01640.1 HORVU3Hr1G069970.2 AT5G41600.1 21798944
AT5G01640.1 HORVU7Hr1G075700.2 AT5G41600.1 21798944
AT5G01640.1 HORVU7Hr1G081290.4 AT5G41600.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS3A01G348100.1 Wheat plastid 94.09 97.64
TraesCS3D01G341700.1 Wheat plastid 97.27 96.83
TraesCS3B01G380000.1 Wheat plastid 93.18 96.24
Os01t0827400-01 Rice extracellular, mitochondrion, plasma membrane 57.27 86.9
EES03822 Sorghum plastid 86.82 85.65
Zm00001d043018_P001 Maize mitochondrion 85.45 85.45
HORVU2Hr1G086930.1 Barley cytosol, plastid 42.27 83.04
HORVU1Hr1G070360.1 Barley plastid 75.0 74.32
GSMUA_Achr5P07440_001 Banana plastid 59.09 60.47
GSMUA_Achr3P10010_001 Banana plastid 58.64 59.72
HORVU4Hr1G024530.1 Barley plastid 55.45 53.98
CDY07736 Canola plastid 50.0 49.55
CDY63156 Canola plastid 49.09 49.54
Bra000056.1-P Field mustard plastid 49.09 48.65
AT2G38360.1 Thale cress plastid 48.18 48.18
CDX80758 Canola plastid 46.36 47.66
PGSC0003DMT400034320 Potato plastid 45.0 46.7
KRG93818 Soybean extracellular, plasma membrane, vacuole 17.73 46.43
KRH76033 Soybean endoplasmic reticulum 45.91 46.12
Solyc10g076360.1.1 Tomato plastid 45.91 45.09
KRH65569 Soybean plastid 45.91 44.49
KRH49465 Soybean plastid 45.0 44.39
PGSC0003DMT400041063 Potato plastid 45.91 44.3
HORVU5Hr1G047520.1 Barley endoplasmic reticulum, plastid 48.64 44.21
CDY61529 Canola plastid 25.0 43.65
OQU79263 Sorghum plastid 32.73 43.64
KRH00333 Soybean plastid 44.55 43.17
AT5G01640.1 Thale cress plastid 43.64 43.05
AT4G00005.1 Thale cress extracellular, plasma membrane 21.82 40.68
Bra005112.1-P Field mustard plastid 30.45 39.88
KRH32827 Soybean plastid 38.64 37.61
CDY54457 Canola endoplasmic reticulum, peroxisome, plasma membrane 30.91 37.36
HORVU1Hr1G028520.1 Barley plastid 31.36 31.94
HORVU3Hr1G018940.2 Barley plastid 31.82 27.45
HORVU5Hr1G106520.1 Barley cytosol 25.91 24.36
HORVU0Hr1G013770.1 Barley mitochondrion 31.36 21.5
Protein Annotations
EnsemblPlants:HORVU3Hr1G088130.1EnsemblPlantsGene:HORVU3Hr1G088130GO:GO:0005575GO:GO:0016020GO:GO:0016021InterPro:Prenylated_rab_accept_PRA1
PANTHER:PTHR19317PANTHER:PTHR19317:SF12PFAM:PF03208SEG:segTMHMM:TMhelixUniParc:UPI000294DB81
UniProt:M0VPS9MapMan:22.8.4.3.2::::
Description
PRA1 family protein [Source:UniProtKB/TrEMBL;Acc:M0VPS9]
Coordinates
chrchr3H:+:623816805..623817810
Molecular Weight (calculated)
23168.9 Da
IEP (calculated)
9.839
GRAVY (calculated)
0.459
Length
220 amino acids
Sequence
(BLAST)
001: MAAAPTPQPL LPVTNPSSGG GSAPSSGSGL SDSALATPAF RLFLSRVSDT ARRSLADRRP WTELIDRSAI SRPDSLSEAT SRLRRNLGYF RVNYAAVVAF
101: SLAASLLAHP FSLLVLLSIL GAWCFLYVFR APDQPVVLFG RTFTDRETLL GLVVSSLLAF FLTSVASLII SGLLVGGALV AVHGAFRMPE DLFLDDSTAV
201: SSGNASHRLL SFLASPGSGV
Best Arabidopsis Sequence Match ( AT5G05380.2 )
(BLAST)
001: MGLFFMNLLK STWTVEMLRC RERSMVRVIT RDHDVNTGNR LLQKKSIHSY GPLIHAPSSH PHAQSCVMMA NPPTLPISDH SGGGSQSQQP VSTPAFRTFL
101: SRLSSSIRQS LSQRRPWLEL VDRSAISRPE SLTDAYSRIR RNLPYFKVNY VTIVSLVLAL SLLSHPFSLL VLLCLFCAWI FLYLFRPSDQ PLVVLGRTFS
201: DRETLGVLVI LTIVVVFLTS VGSLLTSALM IGFGIVCLHG AFRVPEDLFL DDQEPANTGL LSFLSGAATS AAVAAASTPA SGRV
Arabidopsis Description
PRA1.B3prenylated RAB acceptor 1.B3 [Source:TAIR;Acc:AT5G05380]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.