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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • nucleus 1
  • plastid 3
  • endoplasmic reticulum 2
  • plasma membrane 3
  • extracellular 1
  • vacuole 1
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:nucleus, plastid, secretory
BaCelLo:nucleus
ChloroP:plastid
iPSORT:plastid
MultiLoc:endoplasmic reticulum
Plant-mPloc:plasma membrane
PProwler:secretory
WoLF PSORT:plastid
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra002620.1-P
Bra014069.1-P
Bra019475.1-P
Bra032216.1-P
Bra033830.1-P
Bra038265.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G38360.1 Bra014069.1-P AT1G47260.1 21798944
AT2G38360.1 Bra032216.1-P AT1G47260.1 21798944
AT2G38360.1 Bra019475.1-P AT3G46060.1 21798944
AT2G38360.1 Bra033830.1-P AT3G46060.1 21798944
AT2G38360.1 Bra038265.1-P AT3G46060.1 21798944
AT2G38360.1 Bra002620.1-P AT5G58750.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY54457 Canola endoplasmic reticulum, peroxisome, plasma membrane 96.43 89.01
Bra000056.1-P Field mustard plastid 77.98 59.01
AT2G38360.1 Thale cress plastid 74.4 56.82
GSMUA_Achr7P22310_001 Banana plastid 55.95 50.0
GSMUA_Achr10P... Banana plastid 51.79 47.8
GSMUA_Achr5P14320_001 Banana plastid 51.19 45.99
Os01t0827400-01 Rice extracellular, mitochondrion, plasma membrane 38.1 44.14
KRH76033 Soybean endoplasmic reticulum 56.55 43.38
Bra003228.1-P Field mustard plastid 52.98 42.18
PGSC0003DMT400034320 Potato plastid 52.98 41.98
KRH65569 Soybean plastid 55.36 40.97
Solyc10g076360.1.1 Tomato plastid 54.17 40.62
HORVU2Hr1G086930.1 Barley cytosol, plastid 26.79 40.18
PGSC0003DMT400041063 Potato plastid 54.17 39.91
Bra007216.1-P Field mustard plastid 47.62 39.41
GSMUA_Achr4P18690_001 Banana plastid 51.19 38.91
Bra004965.1-P Field mustard plastid 48.21 38.03
Bra009110.1-P Field mustard plastid 48.21 37.67
KXG38626 Sorghum golgi, plasma membrane, plastid 41.07 37.3
GSMUA_Achr5P07440_001 Banana plastid 47.62 37.21
GSMUA_Achr3P10010_001 Banana plastid 47.62 37.04
Os11t0107600-01 Rice plastid 47.62 36.36
Os12t0107600-00 Rice plastid 47.62 36.36
Zm00001d010603_P002 Maize mitochondrion 45.83 35.48
TraesCS4D01G132000.1 Wheat plastid 47.62 35.24
TraesCS4A01G180500.1 Wheat plastid 47.62 35.09
HORVU4Hr1G024530.1 Barley plastid 47.02 34.96
OQU82692 Sorghum plastid 46.43 34.82
TraesCS4B01G137300.1 Wheat plastid 47.02 34.8
KXG22202 Sorghum plastid 44.64 34.56
KRH49465 Soybean plastid 45.83 34.53
Bra005924.1-P Field mustard plastid 44.05 33.95
KRH00333 Soybean plastid 45.83 33.92
EES15518 Sorghum plastid 45.83 33.05
Bra037983.1-P Field mustard extracellular, plasma membrane 27.38 32.86
Os05t0474400-01 Rice plasma membrane, vacuole 42.86 32.73
HORVU1Hr1G070360.1 Barley plastid 42.86 32.43
KRH32827 Soybean plastid 43.45 32.3
TraesCS1B01G307400.1 Wheat golgi, unclear 41.67 31.82
TraesCS1A01G297900.1 Wheat plastid 41.67 31.67
TraesCS1D01G293300.1 Wheat plastid 41.67 31.67
TraesCS3B01G380000.1 Wheat plastid 39.29 30.99
TraesCS5D01G156800.1 Wheat endoplasmic reticulum, plasma membrane, vacuole 41.67 30.97
TraesCS3A01G348100.1 Wheat plastid 38.69 30.66
TraesCS5A01G151600.1 Wheat plastid 41.07 30.53
TraesCS5B01G150200.1 Wheat plastid 41.07 30.53
HORVU3Hr1G088130.1 Barley plastid 39.88 30.45
TraesCS3D01G341700.1 Wheat plastid 39.29 29.86
KRG93818 Soybean extracellular, plasma membrane, vacuole 14.88 29.76
Zm00001d043018_P001 Maize mitochondrion 38.1 29.09
HORVU5Hr1G047520.1 Barley endoplasmic reticulum, plastid 41.67 28.93
EES03822 Sorghum plastid 38.1 28.7
Zm00001d052322_P001 Maize plastid 32.14 28.57
Bra021504.1-P Field mustard endoplasmic reticulum, peroxisome, plasma membrane 30.36 28.02
Bra031001.1-P Field mustard plasma membrane 28.57 26.52
Bra025954.1-P Field mustard plasma membrane 28.57 26.09
Bra027406.1-P Field mustard plasma membrane 27.38 25.41
Bra038009.1-P Field mustard cytosol, endoplasmic reticulum, plasma membrane 26.19 23.66
Bra018602.1-P Field mustard plastid 27.98 22.6
OQU79263 Sorghum plastid 21.43 21.82
Bra014355.1-P Field mustard cytosol, plasma membrane, plastid 23.21 20.63
Bra011125.1-P Field mustard mitochondrion 20.83 20.0
Bra002833.1-P Field mustard plastid 22.02 20.0
Bra030561.1-P Field mustard plasma membrane 19.05 17.98
Bra021503.1-P Field mustard plastid 20.83 16.83
Bra017037.1-P Field mustard plastid 7.74 15.12
Bra007796.1-P Field mustard plastid 7.74 15.12
Bra021502.1-P Field mustard plastid 18.45 14.49
Protein Annotations
EnsemblPlants:Bra005112.1EnsemblPlants:Bra005112.1-PEnsemblPlantsGene:Bra005112GO:GO:0005575GO:GO:0016020GO:GO:0016021
InterPro:Prenylated_rab_accept_PRA1PANTHER:PTHR19317PANTHER:PTHR19317:SF34PFAM:PF03208SEG:segTMHMM:TMhelix
UniParc:UPI00025476B9UniProt:M4CLM5MapMan:22.8.4.3.2:::
Description
AT2G38360 (E=2e-048) PRA1.B4 | PRA1.B4 (PRENYLATED RAB ACCEPTOR 1.B4)
Coordinates
chrA05:+:3482296..3483154
Molecular Weight (calculated)
18086.9 Da
IEP (calculated)
5.411
GRAVY (calculated)
0.814
Length
168 amino acids
Sequence
(BLAST)
001: MSLFCNGTCQ TLPDNGFHVT TNPPNLHLSN YSYFKVNYLA VATAIVGFSL VTHPFSLAFL LCLLASWLFF YLLRPSDHPV VVFGRTFSDM ETLGCLILFS
101: VFVVFLTDVG SVLVSAVMVG VALVCAHGAF RAPEDLFLDE QETAATGFLS FLGNASYSAA PAVVAARA
Best Arabidopsis Sequence Match ( AT2G38360.1 )
(BLAST)
001: MASSAPPVLP ISNPQTVPSA APSSVESQPP IATPAFRNFI NQITETVKNG LSKRRPWAEL ADRSALSKPE SISDAAVRIR KNYSYFKVNY LTVATAIVGF
101: SLVTHPFSLV FLLCLLASWL FLYLFRPTDQ PIVLFGRTFS DRETLGCLIL FSIFVIFLTD VGSVLVSAMM IGVALICAHG AFRAPEDLFL DEQEPAATGF
201: LSFLGGAASS AAPAVIAARV
Arabidopsis Description
PRA1B4PRA1 family protein B4 [Source:UniProtKB/Swiss-Prot;Acc:O80915]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.