Factsheet for Bra003228.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
peroxisome 1
plasma membrane 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	peroxisome, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	peroxisome
Plant-mPloc:	plasma membrane
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX67633	Canola	plastid	98.1	98.1
AT3G56110.1	Thale cress	plastid	93.84	94.74
Bra017037.1-P	Field mustard	plastid	38.39	94.19
Bra007796.1-P	Field mustard	plastid	37.91	93.02
Bra007216.1-P	Field mustard	plastid	89.1	92.61
Bra004965.1-P	Field mustard	plastid	79.15	78.4
KRH54835	Soybean	endoplasmic reticulum, extracellular, vacuole	36.02	70.37
Bra009110.1-P	Field mustard	plastid	70.14	68.84
Solyc06g050570.1.1	Tomato	plastid	71.09	68.81
PGSC0003DMT400061546	Potato	plastid	70.62	68.35
KRH73238	Soybean	plastid	68.72	67.44
KRH14895	Soybean	plastid	67.77	66.51
Bra000056.1-P	Field mustard	plastid	63.03	59.91
Bra005112.1-P	Field mustard	plastid	42.18	52.98
Bra005924.1-P	Field mustard	plastid	53.08	51.38
Bra037983.1-P	Field mustard	extracellular, plasma membrane	27.49	41.43
Bra021504.1-P	Field mustard	endoplasmic reticulum, peroxisome, plasma membrane	32.7	37.91
Bra027406.1-P	Field mustard	plasma membrane	32.23	37.57
Bra014355.1-P	Field mustard	cytosol, plasma membrane, plastid	30.33	33.86
Bra031001.1-P	Field mustard	plasma membrane	28.44	33.15
Bra025954.1-P	Field mustard	plasma membrane	27.96	32.07
Bra002833.1-P	Field mustard	plastid	27.49	31.35
Bra011125.1-P	Field mustard	mitochondrion	25.12	30.29
Bra038009.1-P	Field mustard	cytosol, endoplasmic reticulum, plasma membrane	26.07	29.57
Bra018602.1-P	Field mustard	plastid	27.96	28.37
Bra030561.1-P	Field mustard	plasma membrane	22.75	26.97
Bra021502.1-P	Field mustard	plastid	22.27	21.96
Bra021503.1-P	Field mustard	plastid	21.33	21.63

Protein Annotations

EnsemblPlants:Bra003228.1	EnsemblPlants:Bra003228.1-P	EnsemblPlantsGene:Bra003228	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:Prenylated_rab_accept_PRA1	PANTHER:PTHR19317	PANTHER:PTHR19317:SF34	PFAM:PF03208	SEG:seg	TMHMM:TMhelix
UniParc:UPI00025414C1	UniProt:M4CG95	MapMan:22.8.4.3.2	:	:	:

Description

AT3G56110 (E=3e-073) PRA1.B1 | PRA1.B1 (PRENYLATED RAB ACCEPTOR 1.B1)

Coordinates

chrA07:-:12032062..12032697

Molecular Weight (calculated)

22723.8 Da

IEP (calculated)

9.187

GRAVY (calculated)

0.542

Length

211 amino acids

Sequence
(BLAST)

001: MSTPPTTLPV TNQQAVQSQP PINTPAFRTF FSRLSASIRD GLSQRRPWAE LVDRSSMARP ESLTDALSRI RKNLAYFKVN YVAVVSLVLA FSLFSHPLSL
101: LVLLGLLAGW MFLYLFRPSD QPLVVFGRTF SDRETLLALV LSTIVVVFMT SVGSLLTSAL MVGVAIVCVH GAFVVPDDLF MDDQEPANAG LLSFLGGSAT
201: SAAASAVAGR V

Best Arabidopsis Sequence Match ( AT3G56110.4 )
(BLAST)

001: MATPPTLPVT NQQAVQSQPP INTPAFRTFF SRLSTSIRDG LSQRRPWTEL IDRSSMARPE SLTDALSRIR KNLAYFKVNY VAIVSLVLAF SLFSHPLSLL
101: VLIGLLGGWM FLYLFRPSDQ PLVVFGRTFS DRETLLALVL STIVVVFMTS VGSLLTSALM IGVAIVCVHG AFVVPDDLFL DEQEPANAGL LSFLGGSATS
201: AAAAVSGRV

Arabidopsis Description

PRA1B1PRA1 family protein [Source:UniProtKB/TrEMBL;Acc:A0A178VNJ7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.