Factsheet for Bra014355.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid, cytosol

Predictor Summary:

nucleus 1
plastid 2
cytosol 1
plasma membrane 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plasma membrane, plastid
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra003923.1-P
Bra009010.1-P
Bra010452.1-P
Bra013908.1-P
Bra013910.1-P
Bra022985.1-P
Bra035731.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G55190.1	Bra003923.1-P	AT1G71480.1	21798944
AT1G55190.1	Bra022985.1-P	AT2G34690.1	18845362
AT1G55190.1	Bra010452.1-P	AT4G25680.1	21798944
AT1G55190.1	Bra013908.1-P	AT4G25680.1	21798944
AT1G55190.1	Bra013910.1-P	AT4G25680.1	21798944
AT1G55190.1	Bra009010.1-P	AT5G10730.1	21798944
AT1G55190.1	Bra035731.1-P	AT5G51180.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY08228	Canola	plasma membrane	99.47	99.47
AT1G55190.1	Thale cress	plasma membrane	80.42	80.42
Bra037983.1-P	Field mustard	extracellular, plasma membrane	58.73	79.29
Bra027406.1-P	Field mustard	plasma membrane	56.08	58.56
Solyc03g121460.1.1	Tomato	plastid	54.5	56.59
PGSC0003DMT400006409	Potato	plasma membrane	53.97	56.04
Bra021504.1-P	Field mustard	endoplasmic reticulum, peroxisome, plasma membrane	51.32	53.3
VIT_09s0002g02400.t01	Wine grape	plastid	53.97	52.85
KRH47141	Soybean	plasma membrane	49.74	52.81
KRH44167	Soybean	plasma membrane	48.15	51.7
KRH10001	Soybean	mitochondrion	50.26	51.63
KRH23330	Soybean	plastid	48.68	50.0
GSMUA_Achr7P09070_001	Banana	plastid	47.09	47.34
TraesCS1D01G130300.1	Wheat	plastid	46.56	46.07
TraesCS1A01G124100.1	Wheat	plastid	46.03	45.55
TraesCS1B01G143000.1	Wheat	plastid	46.03	45.31
Os05t0200280-01	Rice	plasma membrane	45.5	44.56
Bra025954.1-P	Field mustard	plasma membrane	42.86	44.02
EES00126	Sorghum	plastid	43.92	43.23
Bra031001.1-P	Field mustard	plasma membrane	41.27	43.09
Zm00001d037747_P001	Maize	plastid	42.86	43.09
TraesCS3B01G122600.1	Wheat	plastid	42.86	42.63
TraesCS3D01G106500.1	Wheat	plastid	42.86	42.63
Zm00001d039455_P002	Maize	extracellular, mitochondrion	43.39	42.49
OQU77594	Sorghum	plastid	43.92	42.35
TraesCS3A01G104300.1	Wheat	plastid	42.33	41.88
Os01t0196500-01	Rice	plastid	42.86	40.3
HORVU1Hr1G028520.1	Barley	plastid	45.5	39.81
Bra021502.1-P	Field mustard	plastid	39.15	34.58
Bra018602.1-P	Field mustard	plastid	37.57	34.13
Bra021503.1-P	Field mustard	plastid	37.04	33.65
Bra011125.1-P	Field mustard	mitochondrion	30.69	33.14
Bra007216.1-P	Field mustard	plastid	34.92	32.51
Bra038009.1-P	Field mustard	cytosol, endoplasmic reticulum, plasma membrane	31.75	32.26
Bra004965.1-P	Field mustard	plastid	35.98	31.92
HORVU3Hr1G018940.2	Barley	plastid	42.86	31.76
Bra003228.1-P	Field mustard	plastid	33.86	30.33
Bra017037.1-P	Field mustard	plastid	13.76	30.23
Bra030561.1-P	Field mustard	plasma membrane	28.04	29.78
Bra002833.1-P	Field mustard	plastid	29.1	29.73
Bra007796.1-P	Field mustard	plastid	13.23	29.07
Bra009110.1-P	Field mustard	plastid	31.75	27.91
Bra005924.1-P	Field mustard	plastid	29.1	25.23
Bra000056.1-P	Field mustard	plastid	28.04	23.87
Bra005112.1-P	Field mustard	plastid	20.63	23.21

Protein Annotations

EnsemblPlants:Bra014355.1	EnsemblPlants:Bra014355.1-P	EnsemblPlantsGene:Bra014355	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:Prenylated_rab_accept_PRA1	PANTHER:PTHR19317	PANTHER:PTHR19317:SF2	PFAM:PF03208	SEG:seg	TMHMM:TMhelix
UniParc:UPI00025459E4	UniProt:M4DCY8	MapMan:22.8.4.3.2	:	:	:

Description

AT1G55190 (E=4e-082) PRA1.F2, PRA7 | PRA7

Coordinates

chrA08:+:1434964..1435533

Molecular Weight (calculated)

20976.7 Da

IEP (calculated)

7.255

GRAVY (calculated)

0.480

Length

189 amino acids

Sequence
(BLAST)

001: MTNYGAIPTS SHPSPPVDLE YISHVKHRLK AGLATRRPWR SMFDLESMTV PQGFLDAISR MKTNLVYFRA NYAIAVLFML FVSLLYHPTS LLVLAILVVF
101: WIFLYFLRDE PLVLFGHQVD DRTVMISLSA LTIGMLLFTH ATGNILGSLL TAVVLVLIHA GIRRSDNLYS DEEAAAAAET SGLASYPSS

Best Arabidopsis Sequence Match ( AT1G55190.1 )
(BLAST)

001: MTNYGAIPTS SHPSPAIDLE YISRAKHRIK SGLATRRPWK SMFDFESMTL PHGFFDAISR IKTNLGYFRA NYAIGVLFIL FLSLLYHPTS LIVLSILVVF
101: WIFLYFLRDE PLVVFGYQID DRTVLIGLSV LTVVMLLLTH ATSNILGSLL TAAVLVLIHA AVRRSDNLFL DEEAAAVTEA SGLMSYPSS

Arabidopsis Description

PRA1F2PRA1 family protein F2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C889]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.