Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 6
- peroxisome 1
- plasma membrane 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr5P14320_001 | Banana | plastid | 71.95 | 85.03 |
| GSMUA_Achr10P... | Banana | plastid | 61.99 | 75.27 |
| GSMUA_Achr7P22310_001 | Banana | plastid | 63.35 | 74.47 |
| GSMUA_Achr3P10010_001 | Banana | plastid | 65.61 | 67.13 |
| GSMUA_Achr5P07440_001 | Banana | plastid | 63.35 | 65.12 |
| CDY63156 | Canola | plastid | 60.63 | 61.47 |
| Bra000056.1-P | Field mustard | plastid | 61.54 | 61.26 |
| CDY07736 | Canola | plastid | 61.09 | 60.81 |
| AT2G38360.1 | Thale cress | plastid | 59.73 | 60.0 |
| KRH76033 | Soybean | endoplasmic reticulum | 57.47 | 57.99 |
| KRH65569 | Soybean | plastid | 58.37 | 56.83 |
| Solyc10g076360.1.1 | Tomato | plastid | 57.01 | 56.25 |
| PGSC0003DMT400034320 | Potato | plastid | 53.85 | 56.13 |
| PGSC0003DMT400041063 | Potato | plastid | 57.01 | 55.26 |
| KRG93818 | Soybean | extracellular, plasma membrane, vacuole | 20.81 | 54.76 |
| CDX80758 | Canola | plastid | 50.23 | 51.87 |
| Bra005112.1-P | Field mustard | plastid | 38.91 | 51.19 |
| AT5G01640.1 | Thale cress | plastid | 51.13 | 50.67 |
| AT4G00005.1 | Thale cress | extracellular, plasma membrane | 26.7 | 50.0 |
| KRH32827 | Soybean | plastid | 49.32 | 48.23 |
| CDY54457 | Canola | endoplasmic reticulum, peroxisome, plasma membrane | 39.37 | 47.8 |
| KRH49465 | Soybean | plastid | 46.61 | 46.19 |
| KRH00333 | Soybean | plastid | 46.15 | 44.93 |
| CDY61529 | Canola | plastid | 23.98 | 42.06 |
| GSMUA_Achr7P07600_001 | Banana | plastid | 35.75 | 38.16 |
| GSMUA_Achr7P09070_001 | Banana | plastid | 30.32 | 35.64 |
| GSMUA_AchrUn_... | Banana | plastid | 33.48 | 31.49 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr4P18690_001 | EnsemblPlants:GSMUA_Achr4T18690_001 | EnsemblPlantsGene:GSMUA_Achr4G18690_001 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:Prenylated_rab_accept_PRA1 | PANTHER:PTHR19317 | PANTHER:PTHR19317:SF34 | PFAM:PF03208 | SEG:seg | TMHMM:TMhelix |
| UniParc:UPI0002958653 | UniProt:M0SQ32 | MapMan:22.8.4.3.2 | : | : | : |
Description
PRA1 family protein B4 [Source:GMGC_GENE;Acc:GSMUA_Achr4G18690_001]
Coordinates
chr4:-:19685488..19686153
Molecular Weight (calculated)
22994.0 Da
IEP (calculated)
8.755
GRAVY (calculated)
0.701
Length
221 amino acids
Sequence
(BLAST)
(BLAST)
001: MLSAAPAPTP LPISNSPSSV APAAPASAAL VATPAFRLFL SRLTDSARRS LNNCRPWSEL ADRSAFSRPE SLGDAASRLR NNLAYFRVNY VAVVAAVLAI
101: SLITNPFSLL VLLALLAGWC LLYLFRPSDP PLVILGRTFS DRETLGFLVL ATIFVVFLTS VGSLLISALV AGAAIIGAHG AFRVPEDLFL DEQEAGAASG
201: LLSFLSGAAS TGPVALAAAR V
101: SLITNPFSLL VLLALLAGWC LLYLFRPSDP PLVILGRTFS DRETLGFLVL ATIFVVFLTS VGSLLISALV AGAAIIGAHG AFRVPEDLFL DEQEAGAASG
201: LLSFLSGAAS TGPVALAAAR V
001: MASSAPPVLP ISNPQTVPSA APSSVESQPP IATPAFRNFI NQITETVKNG LSKRRPWAEL ADRSALSKPE SISDAAVRIR KNYSYFKVNY LTVATAIVGF
101: SLVTHPFSLV FLLCLLASWL FLYLFRPTDQ PIVLFGRTFS DRETLGCLIL FSIFVIFLTD VGSVLVSAMM IGVALICAHG AFRAPEDLFL DEQEPAATGF
201: LSFLGGAASS AAPAVIAARV
101: SLVTHPFSLV FLLCLLASWL FLYLFRPTDQ PIVLFGRTFS DRETLGCLIL FSIFVIFLTD VGSVLVSAMM IGVALICAHG AFRAPEDLFL DEQEPAATGF
201: LSFLGGAASS AAPAVIAARV
Arabidopsis Description
PRA1B4PRA1 family protein B4 [Source:UniProtKB/Swiss-Prot;Acc:O80915]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.