Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G380000.1 | Wheat | plastid | 97.17 | 96.71 |
| TraesCS3D01G341700.1 | Wheat | plastid | 98.11 | 94.12 |
| HORVU3Hr1G088130.1 | Barley | plastid | 97.64 | 94.09 |
| Os01t0827400-01 | Rice | extracellular, mitochondrion, plasma membrane | 59.43 | 86.9 |
| Zm00001d043018_P001 | Maize | mitochondrion | 85.85 | 82.73 |
| EES03822 | Sorghum | plastid | 86.32 | 82.06 |
| HORVU2Hr1G086930.1 | Barley | cytosol, plastid | 41.98 | 79.46 |
| TraesCS1A01G297900.1 | Wheat | plastid | 73.11 | 70.14 |
| GSMUA_Achr3P10010_001 | Banana | plastid | 58.49 | 57.41 |
| GSMUA_Achr5P07440_001 | Banana | plastid | 57.55 | 56.74 |
| TraesCS4A01G180500.1 | Wheat | plastid | 56.6 | 52.63 |
| TraesCS5A01G151600.1 | Wheat | plastid | 51.89 | 48.67 |
| CDY07736 | Canola | plastid | 49.06 | 46.85 |
| CDY63156 | Canola | plastid | 48.11 | 46.79 |
| CDX80758 | Canola | plastid | 47.17 | 46.73 |
| PGSC0003DMT400034320 | Potato | plastid | 46.7 | 46.7 |
| Bra000056.1-P | Field mustard | plastid | 48.11 | 45.95 |
| KRH76033 | Soybean | endoplasmic reticulum | 47.17 | 45.66 |
| AT2G38360.1 | Thale cress | plastid | 47.17 | 45.45 |
| KRG93818 | Soybean | extracellular, plasma membrane, vacuole | 17.92 | 45.24 |
| Solyc10g076360.1.1 | Tomato | plastid | 47.64 | 45.09 |
| KRH49465 | Soybean | plastid | 46.7 | 44.39 |
| PGSC0003DMT400041063 | Potato | plastid | 47.64 | 44.3 |
| KRH65569 | Soybean | plastid | 47.17 | 44.05 |
| KRH00333 | Soybean | plastid | 46.23 | 43.17 |
| OQU79263 | Sorghum | plastid | 33.49 | 43.03 |
| AT5G01640.1 | Thale cress | plastid | 44.34 | 42.15 |
| CDY61529 | Canola | plastid | 24.53 | 41.27 |
| AT4G00005.1 | Thale cress | extracellular, plasma membrane | 22.64 | 40.68 |
| Bra005112.1-P | Field mustard | plastid | 30.66 | 38.69 |
| KRH32827 | Soybean | plastid | 39.62 | 37.17 |
| CDY54457 | Canola | endoplasmic reticulum, peroxisome, plasma membrane | 31.13 | 36.26 |
| TraesCS1A01G124100.1 | Wheat | plastid | 31.6 | 35.08 |
| TraesCS3A01G104300.1 | Wheat | plastid | 31.6 | 35.08 |
| TraesCS5A01G443300.1 | Wheat | plastid | 30.66 | 27.9 |
| TraesCS5A01G381200.1 | Wheat | plastid | 31.6 | 26.17 |
Protein Annotations
| EnsemblPlants:TraesCS3A01G348100.1 | EnsemblPlantsGene:TraesCS3A01G348100 | InterPro:Prenylated_rab_accept_PRA1 | PANTHER:PTHR19317 | PANTHER:PTHR19317:SF12 | PFAM:PF03208 |
| SEG:seg | TMHMM:TMhelix | MapMan:22.8.4.3.2 | : | : | : |
Description
No Description!
Coordinates
chr3A:-:596799845..596800483
Molecular Weight (calculated)
22550.3 Da
IEP (calculated)
9.839
GRAVY (calculated)
0.475
Length
212 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAAPTPQPL LPVTNPSSGG GLSDSALATP AFRLFLSRVS DTARRSLADR RPWTELIDRS AISRPDSLSE ATSRLRRNLG YFRVNYAAVV AFSLAASLLA
101: HPISLLVLLS ILGAWCFLYV FRAPDQPVVL FGRTFTDRET LLGLLVSSLL AFFLTSVASL IISGLLVGGA LVAVHGAFRM PEDLFLDDSS SVSSGNTSHR
201: LLSFLASPGS GV
101: HPISLLVLLS ILGAWCFLYV FRAPDQPVVL FGRTFTDRET LLGLLVSSLL AFFLTSVASL IISGLLVGGA LVAVHGAFRM PEDLFLDDSS SVSSGNTSHR
201: LLSFLASPGS GV
001: MATPPTLPVT NQQAVQSQPP INTPAFRTFF SRLSTSIRDG LSQRRPWTEL IDRSSMARPE SLTDALSRIR KNLAYFKVNY VAIVSLVLAF SLFSHPLSLL
101: VLIGLLGGWM FLYLFRPSDQ PLVVFGRTFS DRETLLALVL STIVVVFMTS VGSLLTSALM IGVAIVCVHG AFVVPDDLFL DEQEPANAGL LSFLGGSATS
201: AAAAVSGRV
101: VLIGLLGGWM FLYLFRPSDQ PLVVFGRTFS DRETLLALVL STIVVVFMTS VGSLLTSALM IGVAIVCVHG AFVVPDDLFL DEQEPANAGL LSFLGGSATS
201: AAAAVSGRV
Arabidopsis Description
PRA1B1PRA1 family protein [Source:UniProtKB/TrEMBL;Acc:A0A178VNJ7]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.