Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- extracellular 2
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 3
- golgi 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G156800.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 95.58 | 95.58 |
| TraesCS5A01G151600.1 | Wheat | plastid | 94.25 | 94.25 |
| HORVU5Hr1G047520.1 | Barley | endoplasmic reticulum, plastid | 85.84 | 80.17 |
| Os11t0107600-01 | Rice | plastid | 69.91 | 71.82 |
| Os12t0107600-00 | Rice | plastid | 69.03 | 70.91 |
| TraesCS4B01G137300.1 | Wheat | plastid | 69.91 | 69.6 |
| OQU82692 | Sorghum | plastid | 66.81 | 67.41 |
| EES15518 | Sorghum | plastid | 67.26 | 65.24 |
| Zm00001d052322_P001 | Maize | plastid | 54.42 | 65.08 |
| KXG38626 | Sorghum | golgi, plasma membrane, plastid | 45.13 | 55.14 |
| GSMUA_Achr3P10010_001 | Banana | plastid | 52.65 | 55.09 |
| GSMUA_Achr5P07440_001 | Banana | plastid | 51.33 | 53.95 |
| TraesCS3B01G380000.1 | Wheat | plastid | 50.0 | 53.05 |
| TraesCS1B01G307400.1 | Wheat | golgi, unclear | 50.88 | 52.27 |
| Solyc10g076360.1.1 | Tomato | plastid | 46.9 | 47.32 |
| KRH76033 | Soybean | endoplasmic reticulum | 45.58 | 47.03 |
| PGSC0003DMT400041063 | Potato | plastid | 47.35 | 46.93 |
| Bra000056.1-P | Field mustard | plastid | 46.02 | 46.85 |
| CDY07736 | Canola | plastid | 45.58 | 46.4 |
| CDY63156 | Canola | plastid | 44.69 | 46.33 |
| AT2G38360.1 | Thale cress | plastid | 44.25 | 45.45 |
| KRH65569 | Soybean | plastid | 45.58 | 45.37 |
| PGSC0003DMT400034320 | Potato | plastid | 41.59 | 44.34 |
| AT4G00005.1 | Thale cress | extracellular, plasma membrane | 23.01 | 44.07 |
| KRG93818 | Soybean | extracellular, plasma membrane, vacuole | 16.37 | 44.05 |
| AT5G01640.1 | Thale cress | plastid | 43.36 | 43.95 |
| KRH00333 | Soybean | plastid | 43.36 | 43.17 |
| CDX80758 | Canola | plastid | 40.71 | 42.99 |
| KRH49465 | Soybean | plastid | 42.04 | 42.6 |
| TraesCS5B01G385000.1 | Wheat | extracellular, plasma membrane | 26.11 | 41.26 |
| Bra005112.1-P | Field mustard | plastid | 30.53 | 41.07 |
| CDY61529 | Canola | plastid | 22.12 | 39.68 |
| CDY54457 | Canola | endoplasmic reticulum, peroxisome, plasma membrane | 31.42 | 39.01 |
| KRH32827 | Soybean | plastid | 37.17 | 37.17 |
| TraesCS5B01G447900.1 | Wheat | plastid | 30.53 | 29.74 |
| TraesCS3B01G122600.1 | Wheat | plastid | 24.34 | 28.95 |
| TraesCS1B01G143000.1 | Wheat | plastid | 24.34 | 28.65 |
Protein Annotations
| EnsemblPlants:TraesCS5B01G150200.1 | EnsemblPlantsGene:TraesCS5B01G150200 | InterPro:Prenylated_rab_accept_PRA1 | PANTHER:PTHR19317 | PANTHER:PTHR19317:SF35 | PFAM:PF03208 |
| SEG:seg | TMHMM:TMhelix | MapMan:22.8.4.3.2 | : | : | : |
Description
No Description!
Coordinates
chr5B:-:278043794..278044474
Molecular Weight (calculated)
23200.9 Da
IEP (calculated)
7.416
GRAVY (calculated)
0.530
Length
226 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAASPPLLP VSVLPAATTA TTTIVLPVPD TSSAADQRAY LSRLLDSAKR SLSGARPWAE LLDRAALSRP ESLADATARV RRNLAYFRVN YALLVAFSLA
101: ASLLAHPFAL AALLALLAAW CALYLLRAAD APPLEAFGKT FSERETLGGL LAASAFVVFV TSVGSIVFSA LAAGAALACA HGAFRVPEEQ LFLDDDIQPG
201: AGGRVGSSVD LLSFFTNAAG GGGGRG
101: ASLLAHPFAL AALLALLAAW CALYLLRAAD APPLEAFGKT FSERETLGGL LAASAFVVFV TSVGSIVFSA LAAGAALACA HGAFRVPEEQ LFLDDDIQPG
201: AGGRVGSSVD LLSFFTNAAG GGGGRG
001: MASSAPPVLP ISNPQTVPSA APSSVESQPP IATPAFRNFI NQITETVKNG LSKRRPWAEL ADRSALSKPE SISDAAVRIR KNYSYFKVNY LTVATAIVGF
101: SLVTHPFSLV FLLCLLASWL FLYLFRPTDQ PIVLFGRTFS DRETLGCLIL FSIFVIFLTD VGSVLVSAMM IGVALICAHG AFRAPEDLFL DEQEPAATGF
201: LSFLGGAASS AAPAVIAARV
101: SLVTHPFSLV FLLCLLASWL FLYLFRPTDQ PIVLFGRTFS DRETLGCLIL FSIFVIFLTD VGSVLVSAMM IGVALICAHG AFRAPEDLFL DEQEPAATGF
201: LSFLGGAASS AAPAVIAARV
Arabidopsis Description
PRA1B4PRA1 family protein B4 [Source:UniProtKB/Swiss-Prot;Acc:O80915]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.