Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- extracellular 1
- endoplasmic reticulum 1
- vacuole 2
- plasma membrane 2
- golgi 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G132000.1 | Wheat | plastid | 97.81 | 98.24 |
| HORVU4Hr1G024530.1 | Barley | plastid | 96.93 | 97.79 |
| TraesCS4B01G137300.1 | Wheat | plastid | 96.93 | 97.36 |
| Os11t0107600-01 | Rice | plastid | 77.63 | 80.45 |
| Os12t0107600-00 | Rice | plastid | 75.88 | 78.64 |
| OQU82692 | Sorghum | plastid | 72.81 | 74.11 |
| TraesCS5A01G151600.1 | Wheat | plastid | 72.37 | 73.01 |
| EES15518 | Sorghum | plastid | 72.81 | 71.24 |
| Zm00001d052322_P001 | Maize | plastid | 57.89 | 69.84 |
| GSMUA_Achr3P10010_001 | Banana | plastid | 59.21 | 62.5 |
| GSMUA_Achr5P07440_001 | Banana | plastid | 56.14 | 59.53 |
| KXG38626 | Sorghum | golgi, plasma membrane, plastid | 48.25 | 59.46 |
| TraesCS3A01G348100.1 | Wheat | plastid | 52.63 | 56.6 |
| TraesCS1A01G297900.1 | Wheat | plastid | 53.51 | 55.2 |
| KRH76033 | Soybean | endoplasmic reticulum | 52.19 | 54.34 |
| KRH65569 | Soybean | plastid | 52.19 | 52.42 |
| CDY07736 | Canola | plastid | 50.88 | 52.25 |
| CDY63156 | Canola | plastid | 49.56 | 51.83 |
| AT2G38360.1 | Thale cress | plastid | 50.0 | 51.82 |
| Bra000056.1-P | Field mustard | plastid | 50.44 | 51.8 |
| CDX80758 | Canola | plastid | 47.37 | 50.47 |
| KRG93818 | Soybean | extracellular, plasma membrane, vacuole | 18.42 | 50.0 |
| Solyc10g076360.1.1 | Tomato | plastid | 48.68 | 49.55 |
| PGSC0003DMT400034320 | Potato | plastid | 46.05 | 49.53 |
| AT5G01640.1 | Thale cress | plastid | 47.81 | 48.88 |
| AT4G00005.1 | Thale cress | extracellular, plasma membrane | 25.0 | 48.31 |
| PGSC0003DMT400041063 | Potato | plastid | 48.25 | 48.25 |
| Bra005112.1-P | Field mustard | plastid | 35.09 | 47.62 |
| CDY61529 | Canola | plastid | 25.88 | 46.83 |
| KRH00333 | Soybean | plastid | 46.05 | 46.26 |
| KRH49465 | Soybean | plastid | 44.74 | 45.74 |
| CDY54457 | Canola | endoplasmic reticulum, peroxisome, plasma membrane | 35.53 | 44.51 |
| KRH32827 | Soybean | plastid | 42.11 | 42.48 |
| TraesCS1A01G124100.1 | Wheat | plastid | 28.07 | 33.51 |
| TraesCS3A01G104300.1 | Wheat | plastid | 27.19 | 32.46 |
| TraesCS5A01G443300.1 | Wheat | plastid | 32.46 | 31.76 |
| TraesCS5A01G381200.1 | Wheat | plastid | 32.89 | 29.3 |
Protein Annotations
| EnsemblPlants:TraesCS4A01G180500.1 | EnsemblPlantsGene:TraesCS4A01G180500 | InterPro:Prenylated_rab_accept_PRA1 | PANTHER:PTHR19317 | PANTHER:PTHR19317:SF35 | PFAM:PF03208 |
| SEG:seg | TMHMM:TMhelix | MapMan:22.8.4.3.2 | : | : | : |
Description
No Description!
Coordinates
chr4A:-:454763158..454763844
Molecular Weight (calculated)
23308.2 Da
IEP (calculated)
8.219
GRAVY (calculated)
0.600
Length
228 amino acids
Sequence
(BLAST)
(BLAST)
001: MASAAPPLLP TTVPAAAPAT VLPAAPDAAA ANSIASPDPA ATRAFLGRLY DSAKRSLSGA RPWPELLDRA ALSRPDSLSD ATARLRKNLA YFRVNYAALV
101: ALSLAVSLLA HPFSLAALLA LLAAWCFLYL LRPADAAPLN AFGRTFSDRE TLGGLIAASV FVVFLTSVGG IIFSALALGA AVVCAHGAFR VPEDLFLDEV
201: PDQGLVGNGA TINLLSFING AAGGGGRV
101: ALSLAVSLLA HPFSLAALLA LLAAWCFLYL LRPADAAPLN AFGRTFSDRE TLGGLIAASV FVVFLTSVGG IIFSALALGA AVVCAHGAFR VPEDLFLDEV
201: PDQGLVGNGA TINLLSFING AAGGGGRV
001: MASSAPPVLP ISNPQTVPSA APSSVESQPP IATPAFRNFI NQITETVKNG LSKRRPWAEL ADRSALSKPE SISDAAVRIR KNYSYFKVNY LTVATAIVGF
101: SLVTHPFSLV FLLCLLASWL FLYLFRPTDQ PIVLFGRTFS DRETLGCLIL FSIFVIFLTD VGSVLVSAMM IGVALICAHG AFRAPEDLFL DEQEPAATGF
201: LSFLGGAASS AAPAVIAARV
101: SLVTHPFSLV FLLCLLASWL FLYLFRPTDQ PIVLFGRTFS DRETLGCLIL FSIFVIFLTD VGSVLVSAMM IGVALICAHG AFRAPEDLFL DEQEPAATGF
201: LSFLGGAASS AAPAVIAARV
Arabidopsis Description
PRA1B4PRA1 family protein B4 [Source:UniProtKB/Swiss-Prot;Acc:O80915]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.