Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
- golgi 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G278800.1 | Wheat | golgi | 95.65 | 97.58 |
| TraesCS3D01G279100.1 | Wheat | cytosol, nucleus, plasma membrane | 95.26 | 97.18 |
| HORVU3Hr1G069970.2 | Barley | cytosol, nucleus, plasma membrane | 96.84 | 96.08 |
| Os01t0736900-01 | Rice | plasma membrane | 83.0 | 83.0 |
| Zm00001d043551_P003 | Maize | plasma membrane | 83.4 | 82.1 |
| Zm00001d012776_P001 | Maize | extracellular | 81.82 | 81.82 |
| KXG33320 | Sorghum | cytosol, nucleus, plasma membrane | 82.21 | 80.62 |
| TraesCS1B01G360800.1 | Wheat | cytosol, nucleus, plasma membrane | 75.49 | 76.71 |
| CDY08353 | Canola | cytosol, endoplasmic reticulum, nucleus | 65.22 | 66.0 |
| VIT_02s0025g00640.t01 | Wine grape | cytosol, nucleus, plasma membrane | 65.61 | 65.87 |
| CDY25557 | Canola | cytosol, endoplasmic reticulum, nucleus | 65.22 | 65.74 |
| VIT_15s0046g01760.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 66.01 | 65.49 |
| CDY34396 | Canola | cytosol, endoplasmic reticulum, nucleus | 64.03 | 64.54 |
| CDY38194 | Canola | cytosol, nucleus, plasma membrane | 63.64 | 64.4 |
| Bra027678.1-P | Field mustard | cytosol, endoplasmic reticulum, nucleus | 63.64 | 64.14 |
| KRH41254 | Soybean | cytosol, nucleus, plasma membrane | 64.03 | 63.78 |
| Bra027757.1-P | Field mustard | cytosol, endoplasmic reticulum, peroxisome | 62.85 | 63.6 |
| Solyc03g007740.2.1 | Tomato | nucleus | 63.24 | 62.75 |
| KRH59988 | Soybean | mitochondrion | 62.85 | 62.6 |
| PGSC0003DMT400049928 | Potato | cytosol, nucleus, plasma membrane | 62.45 | 61.96 |
| PGSC0003DMT400051387 | Potato | cytosol, nucleus, plasma membrane | 62.45 | 61.96 |
| PGSC0003DMT400000230 | Potato | cytosol, nucleus, plasma membrane | 64.82 | 61.89 |
| AT5G41600.1 | Thale cress | cytosol, nucleus, plasma membrane | 62.85 | 61.87 |
| Solyc10g011870.2.1 | Tomato | cytosol, nucleus, plasma membrane | 64.03 | 61.6 |
| Solyc01g095200.2.1 | Tomato | plastid | 64.03 | 61.6 |
| KRH06560 | Soybean | endoplasmic reticulum | 62.06 | 61.33 |
| PGSC0003DMT400074360 | Potato | cytosol, nucleus, plasma membrane | 61.26 | 61.26 |
| PGSC0003DMT400032086 | Potato | cytosol, nucleus, plasma membrane | 65.22 | 61.11 |
| AT4G23630.2 | Thale cress | nucleus | 66.4 | 61.09 |
| Solyc08g081730.2.1 | Tomato | endoplasmic reticulum, plastid | 64.82 | 60.74 |
| KRH40357 | Soybean | endoplasmic reticulum | 61.66 | 60.7 |
| KRH00872 | Soybean | endoplasmic reticulum | 62.06 | 60.62 |
| CDX79993 | Canola | cytosol, peroxisome, plasma membrane | 60.08 | 60.56 |
| Bra004562.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 60.08 | 60.56 |
| AT1G64090.2 | Thale cress | cytosol, endoplasmic reticulum, nucleus | 64.82 | 60.52 |
| CDY41666 | Canola | cytosol | 65.61 | 60.14 |
| Solyc06g036430.2.1 | Tomato | cytosol, nucleus, plasma membrane | 60.08 | 60.08 |
| CDY24806 | Canola | cytosol | 64.82 | 59.85 |
| CDY52012 | Canola | cytosol, peroxisome, plasma membrane | 60.08 | 59.84 |
| CDY44123 | Canola | cytosol, nucleus, plasma membrane | 65.22 | 59.78 |
| CDY42012 | Canola | cytosol, peroxisome, plasma membrane | 59.29 | 59.76 |
| CDY57657 | Canola | cytosol, nucleus, plasma membrane | 64.82 | 59.64 |
| CDY10954 | Canola | cytosol | 63.64 | 59.63 |
| Bra013717.1-P | Field mustard | nucleus | 64.82 | 59.42 |
| Bra019285.1-P | Field mustard | cytosol | 62.85 | 59.33 |
| Bra010539.1-P | Field mustard | cytosol | 62.85 | 59.11 |
| CDY53913 | Canola | cytosol, peroxisome, plasma membrane | 59.29 | 59.06 |
| Bra003455.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 59.29 | 59.06 |
| AT3G61560.1 | Thale cress | cytosol, nucleus, plasma membrane | 58.5 | 58.5 |
| Bra000739.1-P | Field mustard | cytosol | 61.66 | 58.43 |
| CDX90792 | Canola | cytosol, peroxisome, plasma membrane | 61.26 | 58.05 |
| TraesCS3B01G178100.1 | Wheat | cytosol, nucleus, plasma membrane | 65.61 | 58.04 |
| AT2G46170.1 | Thale cress | cytosol, nucleus, plasma membrane | 58.5 | 58.04 |
| KRG99174 | Soybean | endoplasmic reticulum, plasma membrane | 19.76 | 57.47 |
| AT4G11220.1 | Thale cress | nucleus | 60.87 | 56.83 |
| VIT_16s0050g01790.t01 | Wine grape | cytosol, nucleus, plasma membrane | 56.92 | 56.69 |
| VIT_02s0025g00590.t01 | Wine grape | mitochondrion | 13.44 | 56.67 |
| KRH35223 | Soybean | cytosol, nucleus, plasma membrane | 54.55 | 55.2 |
| CDY13240 | Canola | cytosol, peroxisome, plasma membrane | 34.39 | 54.04 |
| TraesCS1B01G099200.1 | Wheat | cytosol, endoplasmic reticulum, nucleus | 52.57 | 53.2 |
| KRH48008 | Soybean | cytosol, peroxisome, plasma membrane | 63.64 | 51.27 |
| CDY62522 | Canola | cytosol | 15.81 | 50.0 |
| CDY05135 | Canola | mitochondrion | 60.87 | 49.2 |
| AT4G01230.2 | Thale cress | cytosol | 45.45 | 47.13 |
| TraesCS7B01G241100.1 | Wheat | cytosol, peroxisome, plasma membrane, plastid | 47.43 | 46.15 |
| Bra037369.1-P | Field mustard | cytosol | 43.08 | 44.86 |
| CDY07184 | Canola | cytosol, peroxisome, plasma membrane | 43.08 | 44.86 |
| CDY48510 | Canola | cytosol | 43.08 | 44.86 |
| TraesCS1B01G393700.1 | Wheat | cytosol, peroxisome, plasma membrane | 37.55 | 40.6 |
| TraesCS5B01G420300.1 | Wheat | cytosol, nucleus, plasma membrane | 41.11 | 40.15 |
| TraesCS2B01G267800.2 | Wheat | cytosol, peroxisome, vacuole | 39.13 | 40.08 |
| KRG91601 | Soybean | mitochondrion | 53.36 | 39.71 |
| Bra035242.1-P | Field mustard | cytosol | 31.23 | 39.5 |
| TraesCS3B01G294700.1 | Wheat | plasma membrane | 32.81 | 37.9 |
| CDX86802 | Canola | cytosol, nucleus, peroxisome | 35.97 | 37.14 |
| VIT_07s0031g02730.t01 | Wine grape | golgi, mitochondrion, nucleus, plasma membrane | 24.11 | 33.89 |
| TraesCS3B01G060400.1 | Wheat | mitochondrion | 31.23 | 33.33 |
| TraesCS2B01G574200.2 | Wheat | plasma membrane | 24.9 | 31.66 |
| CDX89122 | Canola | extracellular, mitochondrion | 18.58 | 30.72 |
| TraesCS4B01G169100.2 | Wheat | cytosol, peroxisome, vacuole | 27.27 | 30.4 |
Protein Annotations
| EnsemblPlants:TraesCS3B01G313000.1 | EnsemblPlantsGene:TraesCS3B01G313000 | InterPro:IPR003388 | InterPro:Reticulon | PANTHER:PTHR10994 | PANTHER:PTHR10994:SF99 |
| PFAM:PF02453 | PFscan:PS50845 | SEG:seg | TMHMM:TMhelix | MapMan:13.7.2.1 | : |
Description
No Description!
Coordinates
chr3B:-:502921843..502923631
Molecular Weight (calculated)
28132.6 Da
IEP (calculated)
8.819
GRAVY (calculated)
0.087
Length
253 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEHKEEPVA ESMMDKISDK FHGGGDSSSS SSDSDDEKKG SAAGVKAKIY RLFGREKPVH AVLGGGKPAD LVLWRNKKIS GGVLAGATAI WLLFEIMEYH
101: LLTLVGHCLI LSLATLFLYS NVCIFVHKSP PNIPEVKIPE DMTVNIALSL RHEINRGFFT LREIGHGRDL KKFLIVIGGL WVLSVLGSCC NFLTLSYIVF
201: VVLYTVPVLY EKYDDKVDAF GEKAMIELKK YYAIFEEKVL SKIPKGALKN KKH
101: LLTLVGHCLI LSLATLFLYS NVCIFVHKSP PNIPEVKIPE DMTVNIALSL RHEINRGFFT LREIGHGRDL KKFLIVIGGL WVLSVLGSCC NFLTLSYIVF
201: VVLYTVPVLY EKYDDKVDAF GEKAMIELKK YYAIFEEKVL SKIPKGALKN KKH
001: MAEEHKHDES VIAPEPAVEV VERESLMDKI SEKIHHGGDS SSSSSSSDDE DEKKKTKKPS SPSSSMKSKV YRLFGREQPV HKVLGGGKPA DIFMWKNKKM
101: SGGVLGGATA AWVVFELMEY HLLTLLCHVM IVVLAVLFLW SNATMFINKS PPKIPEVHIP EEPILQLASG LRIEINRGFS SLREIASGRD LKKFLIAIAG
201: LWVLSILGGC FNFLTLAYIA LVLLFTVPLA YDKYEDKVDP LGEKAMIELK KQYAVLDEKV LSKIPLGPLK NKKKD
101: SGGVLGGATA AWVVFELMEY HLLTLLCHVM IVVLAVLFLW SNATMFINKS PPKIPEVHIP EEPILQLASG LRIEINRGFS SLREIASGRD LKKFLIAIAG
201: LWVLSILGGC FNFLTLAYIA LVLLFTVPLA YDKYEDKVDP LGEKAMIELK KQYAVLDEKV LSKIPLGPLK NKKKD
Arabidopsis Description
RTNLB1Reticulon-like protein [Source:UniProtKB/TrEMBL;Acc:A0A178V247]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.