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Potato
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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, nucleus, cytosol

Predictor Summary:
  • cytosol 2
  • plastid 1
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 2
  • golgi 1
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, nucleus, plasma membrane
Any Predictor:cytosol, nucleus, plastid, secretory
BaCelLo:cytosol
MultiLoc:cytosol
Plant-mPloc:plastid
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:nucleus
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc01g095200.2.1 Tomato plastid 95.85 96.58
PGSC0003DMT400049928 Potato cytosol, nucleus, plasma membrane 75.47 78.43
KRH40357 Soybean endoplasmic reticulum 69.06 71.21
KRH00872 Soybean endoplasmic reticulum 69.06 70.66
KRG99174 Soybean endoplasmic reticulum, plasma membrane 23.02 70.11
PGSC0003DMT400032086 Potato cytosol, nucleus, plasma membrane 70.94 69.63
KRH06560 Soybean endoplasmic reticulum 67.17 69.53
PGSC0003DMT400051387 Potato cytosol, nucleus, plasma membrane 66.42 69.02
GSMUA_Achr9P05440_001 Banana nucleus, peroxisome, plasma membrane 65.28 68.92
GSMUA_Achr8P27830_001 Banana cytosol, peroxisome, plasma membrane 64.91 68.53
PGSC0003DMT400074360 Potato cytosol, nucleus, plasma membrane 64.91 67.98
Os01t0226300-01 Rice plasma membrane 45.66 67.98
GSMUA_AchrUn_... Banana cytosol, nucleus, plasma membrane 65.66 67.44
KXG33320 Sorghum cytosol, nucleus, plasma membrane 65.28 67.05
Zm00001d043551_P003 Maize plasma membrane 64.91 66.93
Zm00001d012776_P001 Maize extracellular 63.77 66.8
AT2G46170.1 Thale cress cytosol, nucleus, plasma membrane 63.77 66.27
GSMUA_Achr6P31860_001 Banana cytosol, nucleus, plasma membrane 63.02 66.27
TraesCS1D01G349700.1 Wheat cytosol, nucleus, plasma membrane 61.89 66.13
EES19841 Sorghum cytosol, nucleus, plasma membrane 63.4 65.88
TraesCS1B01G360800.1 Wheat cytosol, nucleus, plasma membrane 61.89 65.86
CDY52012 Canola cytosol, peroxisome, plasma membrane 63.02 65.75
Os05t0526400-01 Rice plasma membrane 62.26 65.74
Os01t0736900-01 Rice plasma membrane 62.64 65.61
GSMUA_Achr10P... Banana cytosol, endoplasmic reticulum, plasma membrane 62.26 65.48
TraesCS3A01G278800.1 Wheat golgi 60.75 64.92
TraesCS3D01G279100.1 Wheat cytosol, nucleus, plasma membrane 60.75 64.92
TraesCS3B01G313000.1 Wheat cytosol, nucleus, plasma membrane 61.89 64.82
AT3G61560.1 Thale cress cytosol, nucleus, plasma membrane 61.89 64.82
HORVU3Hr1G069970.2 Barley cytosol, nucleus, plasma membrane 62.26 64.71
CDY53913 Canola cytosol, peroxisome, plasma membrane 61.51 64.17
Bra003455.1-P Field mustard cytosol, peroxisome, plasma membrane 61.51 64.17
Zm00001d038768_P001 Maize extracellular, mitochondrion 61.51 64.17
Bra004562.1-P Field mustard cytosol, peroxisome, plasma membrane 60.75 64.14
CDX79993 Canola cytosol, peroxisome, plasma membrane 60.75 64.14
CDY42012 Canola cytosol, peroxisome, plasma membrane 60.0 63.35
GSMUA_Achr5P06850_001 Banana cytosol, nucleus, plasma membrane 59.25 62.8
GSMUA_Achr3P31920_001 Banana cytosol 51.7 62.56
GSMUA_Achr4P08400_001 Banana cytosol 59.62 62.45
Zm00001d008982_P001 Maize cytosol, nucleus, plasma membrane 63.77 60.57
TraesCS3D01G159100.1 Wheat cytosol, nucleus, plasma membrane 65.28 60.49
TraesCS3B01G178100.1 Wheat cytosol, nucleus, plasma membrane 64.91 60.14
KXG31516 Sorghum cytosol, nucleus, plasma membrane 64.15 59.86
Os02t0265900-01 Rice cytosol, peroxisome, plasma membrane 50.57 58.26
KRH48008 Soybean cytosol, peroxisome, plasma membrane 68.68 57.96
Zm00001d020229_P001 Maize plasma membrane 32.45 56.58
Zm00001d016041_P001 Maize extracellular 48.3 55.65
Zm00001d039316_P001 Maize cytosol, nucleus, plasma membrane 63.77 55.23
VIT_02s0025g00590.t01 Wine grape mitochondrion 12.45 55.0
HORVU3Hr1G030760.2 Barley mitochondrion 64.53 54.46
OQU84758 Sorghum cytosol, peroxisome, plasma membrane 47.17 53.88
TraesCS3A01G151200.1 Wheat cytosol, peroxisome, plasma membrane 65.28 53.73
Zm00001d020729_P001 Maize plasma membrane 19.25 53.68
EER89811 Sorghum peroxisome 51.7 53.52
TraesCS1A01G346800.3 Wheat plasma membrane 50.57 53.17
Zm00001d037453_P001 Maize cytosol, peroxisome, plasma membrane 52.08 52.87
TraesCS7A01G341800.1 Wheat cytosol, peroxisome, plasma membrane, plastid 50.94 51.92
TraesCS7B01G241100.1 Wheat cytosol, peroxisome, plasma membrane, plastid 50.94 51.92
TraesCS7D01G337800.1 Wheat cytosol, peroxisome, plasma membrane, plastid 50.57 51.54
Os06t0503400-01 Rice plasma membrane 50.94 50.94
PGSC0003DMT400016142 Potato endoplasmic reticulum, golgi, peroxisome 46.42 50.41
HORVU1Hr1G082010.3 Barley cytosol, nucleus, plasma membrane, plastid 49.43 50.19
CDY07184 Canola cytosol, peroxisome, plasma membrane 44.15 48.15
Bra037369.1-P Field mustard cytosol 44.15 48.15
CDY48510 Canola cytosol 44.15 48.15
AT4G01230.2 Thale cress cytosol 44.15 47.95
HORVU7Hr1G081290.4 Barley plastid 40.0 45.89
HORVU7Hr1G075700.2 Barley mitochondrion 50.19 44.33
PGSC0003DMT400002449 Potato cytosol, nucleus, plasma membrane 40.75 42.52
PGSC0003DMT400014404 Potato cytosol, plasma membrane, vacuole 14.72 41.49
GSMUA_Achr3P15760_001 Banana cytosol 23.4 41.33
PGSC0003DMT400078544 Potato endoplasmic reticulum, plasma membrane, vacuole 23.02 39.61
PGSC0003DMT400052428 Potato cytosol, plasma membrane, vacuole 29.43 37.32
PGSC0003DMT400074138 Potato plasma membrane 40.0 35.33
PGSC0003DMT400066222 Potato plasma membrane 26.79 34.8
PGSC0003DMT400042905 Potato cytosol, peroxisome, plasma membrane 30.19 33.61
CDX89122 Canola extracellular, mitochondrion 19.25 33.33
PGSC0003DMT400026113 Potato plasma membrane, plastid 24.15 26.23
Protein Annotations
EntrezGene:102588292MapMan:13.7.2.1GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737
GO:GO:0005783GO:GO:0005789GO:GO:0016020GO:GO:0016021InterPro:IPR003388UniProt:M0ZGB8
PFAM:PF02453EnsemblPlantsGene:PGSC0003DMG400000072PGSC:PGSC0003DMG400000072EnsemblPlants:PGSC0003DMT400000230PFscan:PS50845PANTHER:PTHR10994
PANTHER:PTHR10994:SF70InterPro:ReticulonTMHMM:TMhelixUniParc:UPI000296B2EDRefSeq:XP_006339640.1SEG:seg
Description
24 kDa seed maturation protein [Source:PGSC_GENE;Acc:PGSC0003DMG400000072]
Coordinates
chr1:+:72762185..72765477
Molecular Weight (calculated)
29876.5 Da
IEP (calculated)
8.242
GRAVY (calculated)
-0.065
Length
265 amino acids
Sequence
(BLAST)
001: MAEHAENSDP KGESLMEKIA DKFHGDDSSS SSESDTETKK PVVKSEVEAE PEPETLKNKV WRLFGREKPV HKVFGGGKPA DVFLWRNKKI SGTVLGGATA
101: IWVLFELLEY HLLTLICHIL IITLAVLFLW SNATTFINKK PPHIPEVHLP EGPILQVASA LRIEINRALD LLREIASGRE LKKFLAVIAG LWILSIVGSW
201: CNFLTLFYIS FVLLHTIPVL YEKYEDKVDP LAEKAMHEIK KQYAVFDAKV LSKIPRGPLK DKKKD
Best Arabidopsis Sequence Match ( AT4G23630.2 )
(BLAST)
001: MAEEHKHDES VIAPEPAVEV VERESLMDKI SEKIHHGGDS SSSSSSSDDE DEKKKTKKPS SPSSSMKSKV YRLFGREQPV HKVLGGGKPA DIFMWKNKKM
101: SGGVLGGATA AWVVFELMEY HLLTLLCHVM IVVLAVLFLW SNATMFINKS PPKIPEVHIP EEPILQLASG LRIEINRGFS SLREIASGRD LKKFLIAIAG
201: LWVLSILGGC FNFLTLAYIA LVLLFTVPLA YDKYEDKVDP LGEKAMIELK KQYAVLDEKV LSKIPLGPLK NKKKD
Arabidopsis Description
RTNLB1Reticulon-like protein [Source:UniProtKB/TrEMBL;Acc:A0A178V247]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.