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Potato
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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, nucleus, cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 1
  • plasma membrane 3
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, nucleus, plasma membrane
Any Predictor:cytosol, nucleus, secretory
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:plasma membrane
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:nucleus
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc07g044880.2.1 Tomato mitochondrion 54.33 97.18
KRH14529 Soybean cytosol, peroxisome, plasma membrane 65.75 68.16
KRH73588 Soybean plasma membrane 65.75 68.16
VIT_12s0028g01090.t01 Wine grape cytosol, peroxisome, plasma membrane 62.6 64.11
KRH45979 Soybean cytosol, nucleus, plasma membrane 60.24 62.96
GSMUA_Achr6P04560_001 Banana cytosol, peroxisome, plasma membrane 60.63 62.1
PGSC0003DMT400074138 Potato plasma membrane 70.08 59.33
GSMUA_Achr9P10200_001 Banana cytosol, peroxisome, plasma membrane 56.3 59.09
CDY00916 Canola plasma membrane 55.51 59.0
Bra029827.1-P Field mustard plasma membrane 55.12 58.58
CDY08616 Canola plasma membrane 55.12 58.58
KRG99024 Soybean plasma membrane 60.63 58.33
Os07t0142000-01 Rice plasma membrane 55.12 56.91
EER90788 Sorghum cytosol, nucleus, plasma membrane 55.12 56.68
Zm00001d034313_P001 Maize cytosol, nucleus, plasma membrane 55.12 56.45
AT3G10260.3 Thale cress plasma membrane 59.06 56.18
TraesCS5D01G426200.1 Wheat cytosol, peroxisome, plasma membrane 55.51 54.44
TraesCS5B01G420300.1 Wheat cytosol, nucleus, plasma membrane 55.51 54.44
TraesCS2D01G254800.1 Wheat cytosol, peroxisome, vacuole 52.76 54.25
TraesCS2B01G267800.2 Wheat cytosol, peroxisome, vacuole 52.76 54.25
TraesCS5A01G418200.1 Wheat cytosol, peroxisome, plasma membrane 55.51 54.02
Os03t0781700-01 Rice cytosol, peroxisome, plasma membrane 52.36 53.85
HORVU5Hr1G101680.2 Barley cytosol, endoplasmic reticulum, peroxisome 55.12 53.64
Zm00001d018781_P001 Maize extracellular, mitochondrion 50.79 53.09
TraesCS2A01G254300.1 Wheat cytosol, peroxisome, vacuole 51.57 53.04
PGSC0003DMT400049928 Potato cytosol, nucleus, plasma membrane 42.91 42.75
KXG34376 Sorghum plasma membrane 52.76 42.68
PGSC0003DMT400051387 Potato cytosol, nucleus, plasma membrane 41.34 41.18
PGSC0003DMT400000230 Potato cytosol, nucleus, plasma membrane 42.52 40.75
CDX82165 Canola endoplasmic reticulum, peroxisome, plasma membrane, plastid 39.76 40.73
PGSC0003DMT400074360 Potato cytosol, nucleus, plasma membrane 40.16 40.32
CDY56712 Canola mitochondrion 56.3 40.28
PGSC0003DMT400032086 Potato cytosol, nucleus, plasma membrane 40.55 38.15
PGSC0003DMT400014404 Potato cytosol, plasma membrane, vacuole 13.39 36.17
PGSC0003DMT400016142 Potato endoplasmic reticulum, golgi, peroxisome 34.25 35.66
HORVU2Hr1G060770.16 Barley plasma membrane 52.36 34.73
PGSC0003DMT400052428 Potato cytosol, plasma membrane, vacuole 28.35 34.45
PGSC0003DMT400066222 Potato plasma membrane 27.17 33.82
PGSC0003DMT400078544 Potato endoplasmic reticulum, plasma membrane, vacuole 18.5 30.52
PGSC0003DMT400042905 Potato cytosol, peroxisome, plasma membrane 27.95 29.83
PGSC0003DMT400026113 Potato plasma membrane, plastid 22.83 23.77
Protein Annotations
EntrezGene:102602934MapMan:13.7.2.1GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737
GO:GO:0005783GO:GO:0005789GO:GO:0016020GO:GO:0016021InterPro:IPR003388UniProt:M0ZK48
PFAM:PF02453EnsemblPlantsGene:PGSC0003DMG400000932PGSC:PGSC0003DMG400000932EnsemblPlants:PGSC0003DMT400002449PFscan:PS50845PANTHER:PTHR10994
PANTHER:PTHR10994:SF62InterPro:ReticulonTMHMM:TMhelixUniParc:UPI000296BD74RefSeq:XP_006366629.1SEG:seg
Description
Reticulon family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400000932]
Coordinates
chr7:+:42668296..42673171
Molecular Weight (calculated)
28584.0 Da
IEP (calculated)
9.894
GRAVY (calculated)
0.216
Length
254 amino acids
Sequence
(BLAST)
001: MPERITAEDL LNNIVESIAD GLSKQKSLSK QTSGSFLEQE KSSSVNAQLN RLFGRQKPVH HILGGGKSAD VLLWRNKKIS AGVLASATAI WVLFEWLNYN
101: FLSLLCFALV IGMIIQFLWK NASGMINRSP AKVPRLVLRD DLFISIAKSI GAEVNRVLGF LQDVACGTNI KQFLVVVASL WVAAIIGSWC NFFTVLYIGF
201: VAAHVLPVLY ERYDDQVDGL VYNALEKFQC HYQKLDHRVL SRFPTSKFRL KKFE
Best Arabidopsis Sequence Match ( AT3G10260.1 )
(BLAST)
001: MPDKNIVEDV IGDLVDNFTE TVQKNKHGSS FFEQEDSVSS RFNRLFDRQK PIHHVLGGGK SADVLLWRNK KISASVLMGA TAIWVLFEWI NFHFLSLVCY
101: ALLLGMIAQF VWSNASGFLN RSQSRVPRLV LPKDFFAEVG VAVGKEVNRG LLFLQDLACK GNLKQFLMAV IGLWVAAMVG SCCNFLTVLY IGFVGAHTMP
201: VLYERYEDEV DGFMDSMIMK FHSHYKKLDT GFLSRIPSGK FGLKKRE
Arabidopsis Description
Reticulon family protein [Source:TAIR;Acc:AT3G10260]
SUBAcon: [peroxisome,cytosol,plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.