Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 1
- extracellular 2
- plasma membrane 4
- golgi 1
- endoplasmic reticulum 1
- vacuole 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g107620.2.1 | Tomato | plasma membrane | 100.0 | 93.15 |
| VIT_03s0180g00170.t01 | Wine grape | endoplasmic reticulum, plasma membrane, vacuole | 66.67 | 65.7 |
| KRG91024 | Soybean | plasma membrane | 62.25 | 62.25 |
| KRH35738 | Soybean | endoplasmic reticulum | 60.78 | 60.78 |
| Os04t0670000-01 | Rice | plasma membrane | 52.45 | 53.77 |
| Zm00001d001901_P002 | Maize | plasma membrane | 51.96 | 53.54 |
| EES11624 | Sorghum | plasma membrane | 50.98 | 52.53 |
| Zm00001d026575_P001 | Maize | mitochondrion, peroxisome, plasma membrane, plastid, vacuole | 50.49 | 52.02 |
| AT2G15280.1 | Thale cress | plasma membrane | 50.0 | 50.75 |
| GSMUA_Achr7P05440_001 | Banana | peroxisome, plasma membrane, vacuole | 54.9 | 50.22 |
| TraesCS2B01G574200.2 | Wheat | plasma membrane | 47.06 | 48.24 |
| TraesCS2A01G544000.1 | Wheat | plasma membrane | 47.06 | 48.24 |
| Bra040612.1-P | Field mustard | plasma membrane | 43.14 | 48.09 |
| CDX71213 | Canola | plasma membrane | 46.57 | 46.8 |
| CDY48222 | Canola | cytosol, endoplasmic reticulum, plasma membrane | 46.57 | 46.8 |
| TraesCS2D01G545200.1 | Wheat | plasma membrane | 45.1 | 46.46 |
| PGSC0003DMT400052428 | Potato | cytosol, plasma membrane, vacuole | 41.67 | 40.67 |
| GSMUA_Achr4P20190_001 | Banana | cytosol, plastid | 55.88 | 40.43 |
| HORVU2Hr1G122310.2 | Barley | cytosol, plasma membrane | 31.86 | 34.95 |
| PGSC0003DMT400042905 | Potato | cytosol, peroxisome, plasma membrane | 37.75 | 32.35 |
| PGSC0003DMT400051387 | Potato | cytosol, nucleus, plasma membrane | 35.78 | 28.63 |
| PGSC0003DMT400074360 | Potato | cytosol, nucleus, plasma membrane | 35.29 | 28.46 |
| PGSC0003DMT400016142 | Potato | endoplasmic reticulum, golgi, peroxisome | 33.82 | 28.28 |
| PGSC0003DMT400049928 | Potato | cytosol, nucleus, plasma membrane | 34.31 | 27.45 |
| PGSC0003DMT400002449 | Potato | cytosol, nucleus, plasma membrane | 33.82 | 27.17 |
| PGSC0003DMT400000230 | Potato | cytosol, nucleus, plasma membrane | 34.8 | 26.79 |
| PGSC0003DMT400032086 | Potato | cytosol, nucleus, plasma membrane | 34.31 | 25.93 |
| PGSC0003DMT400014404 | Potato | cytosol, plasma membrane, vacuole | 11.76 | 25.53 |
| PGSC0003DMT400078544 | Potato | endoplasmic reticulum, plasma membrane, vacuole | 18.63 | 24.68 |
| PGSC0003DMT400074138 | Potato | plasma membrane | 34.31 | 23.33 |
| PGSC0003DMT400026113 | Potato | plasma membrane, plastid | 25.98 | 21.72 |
Protein Annotations
| EntrezGene:102603492 | MapMan:13.7.2.1 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005783 | GO:GO:0005789 | GO:GO:0016020 | GO:GO:0016021 | InterPro:IPR003388 | UniProt:M1CF80 |
| PFAM:PF02453 | EnsemblPlantsGene:PGSC0003DMG400025769 | PGSC:PGSC0003DMG400025769 | EnsemblPlants:PGSC0003DMT400066222 | PFscan:PS50845 | PANTHER:PTHR10994 |
| PANTHER:PTHR10994:SF125 | InterPro:Reticulon | TMHMM:TMhelix | UniParc:UPI0002951659 | RefSeq:XP_006346364.1 | RefSeq:XP_006346365.1 |
Description
Reticulon-3 [Source:PGSC_GENE;Acc:PGSC0003DMG400025769]
Coordinates
chr1:+:84039897..84045786
Molecular Weight (calculated)
23208.8 Da
IEP (calculated)
9.944
GRAVY (calculated)
0.427
Length
204 amino acids
Sequence
(BLAST)
(BLAST)
001: MGDNRQSFVH HALGGGSVAD VLLWRRWCAS VTLLVSSTAL WILFERAGYN VLSFVANVML LLVVILFFWA KSASLLNRPL PPIPDLEVHE ESVVKAADMM
101: RVWINHVLMI AHDIAIGGNL KLFVKVSLVL WLISYVGSFF NLLTFIYMGI LFSLSVPLLY DKYQNQIDDK LIIAQKVIQT QYKKIDDNVL RKISRSSNKE
201: KKTQ
101: RVWINHVLMI AHDIAIGGNL KLFVKVSLVL WLISYVGSFF NLLTFIYMGI LFSLSVPLLY DKYQNQIDDK LIIAQKVIQT QYKKIDDNVL RKISRSSNKE
201: KKTQ
001: MGDSVSSSSR VSVHQSLGAG SVADLLLWRN RTGAVILLIS STGFWFLFER AGYNLLSFVS NVLLLLVAIF FLWAKSATVL NRPLPPVPNM EIPEEFANKA
101: ADDLRVWINY VLSIASDITI ARNPIRLLQV SLVLWAISYV GTLINSLTLV YIGVLLSLSF PIVYEKYQDH IDEKVNSTSK FVRNISRKFP LPINKEKKHQ
101: ADDLRVWINY VLSIASDITI ARNPIRLLQV SLVLWAISYV GTLINSLTLV YIGVLLSLSF PIVYEKYQDH IDEKVNSTSK FVRNISRKFP LPINKEKKHQ
Arabidopsis Description
Reticulon-like protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LL94]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.