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Potato
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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol, plasma membrane, vacuole

Predictor Summary:
  • plastid 1
  • cytosol 1
  • plasma membrane 3
  • extracellular 1
  • golgi 1
  • endoplasmic reticulum 1
  • vacuole 2
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, plasma membrane, vacuole
Any Predictor:cytosol, plastid, secretory
BaCelLo:plastid
MultiLoc:cytosol
Plant-mPloc:plasma membrane
PProwler:secretory
WoLF PSORT:vacuole
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
PGSC0003DMT400000833
PGSC0003DMT400007183
PGSC0003DMT400024814
PGSC0003DMT400024816
PGSC0003DMT400032086
PGSC0003DMT400048927
PGSC0003DMT400048929
PGSC0003DMT400048935
PGSC0003DMT400068658
PGSC0003DMT400072398
PGSC0003DMT400072665
PGSC0003DMT400072666

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G54120.1 PGSC0003DMT400007183 AT1G56330.1 21798944
AT3G54120.1 PGSC0003DMT400068658 AT1G56330.1 21798944
AT3G54120.1 PGSC0003DMT400000833 AT2G20130.1 21798944
AT3G54120.1 PGSC0003DMT400024814 AT3G53180.1 21798944
AT3G54120.1 PGSC0003DMT400024816 AT3G53180.1 21798944
AT3G54120.1 PGSC0003DMT400048927 AT3G53180.1 21798944
AT3G54120.1 PGSC0003DMT400048929 AT3G53180.1 21798944
AT3G54120.1 PGSC0003DMT400048935 AT3G53180.1 21798944
AT3G54120.1 PGSC0003DMT400072398 AT3G53180.1 21798944
AT3G54120.1 PGSC0003DMT400072665 AT3G53180.1 21798944
AT3G54120.1 PGSC0003DMT400072666 AT3G53180.1 21798944
AT3G54120.1 PGSC0003DMT400032086 AT4G11220.1 21798944
AT3G54120.1 PGSC0003DMT400032086 AT5G41600.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc09g013110.2.1 Tomato cytosol, plasma membrane, vacuole 95.69 95.69
VIT_08s0007g01720.t01 Wine grape plasma membrane 73.68 73.68
KRH66004 Soybean endoplasmic reticulum, golgi, plasma membrane 70.33 70.33
KRH75801 Soybean plasma membrane 67.94 67.94
CDX67589 Canola golgi, plasma membrane, vacuole 53.11 54.68
Bra003171.1-P Field mustard plasma membrane 52.63 54.19
CDY51584 Canola plasma membrane 52.15 53.69
AT3G54120.1 Thale cress cytosol, plasma membrane, vacuole 51.2 52.71
Bra007047.1-P Field mustard golgi, plasma membrane, vacuole 49.76 50.73
CDX78209 Canola golgi, plasma membrane, vacuole 49.76 50.73
GSMUA_Achr10P... Banana plasma membrane 55.02 50.0
CDX73507 Canola cytosol, golgi, plasma membrane 48.33 49.27
GSMUA_Achr8P02250_001 Banana cytosol, mitochondrion, peroxisome, plasma membrane 55.5 46.96
Os04t0367400-02 Rice plasma membrane 45.93 45.07
EES03891 Sorghum golgi, peroxisome, plasma membrane 45.45 44.81
Zm00001d042846_P001 Maize plasma membrane 44.02 43.81
GSMUA_Achr6P33560_001 Banana plasma membrane 53.59 42.42
Os01t0851300-01 Rice golgi, plasma membrane, vacuole 40.67 41.87
PGSC0003DMT400066222 Potato plasma membrane 40.67 41.67
PGSC0003DMT400042905 Potato cytosol, peroxisome, plasma membrane 44.02 38.66
OQU78555 Sorghum extracellular 40.67 38.46
PGSC0003DMT400074360 Potato cytosol, nucleus, plasma membrane 41.63 34.39
PGSC0003DMT400014404 Potato cytosol, plasma membrane, vacuole 14.83 32.98
PGSC0003DMT400051387 Potato cytosol, nucleus, plasma membrane 40.19 32.94
PGSC0003DMT400049928 Potato cytosol, nucleus, plasma membrane 39.71 32.55
Zm00001d039213_P001 Maize golgi, plasma membrane, plastid 36.36 32.48
PGSC0003DMT400032086 Potato cytosol, nucleus, plasma membrane 41.63 32.22
PGSC0003DMT400016142 Potato endoplasmic reticulum, golgi, peroxisome 34.93 29.92
PGSC0003DMT400000230 Potato cytosol, nucleus, plasma membrane 37.32 29.43
PGSC0003DMT400078544 Potato endoplasmic reticulum, plasma membrane, vacuole 21.53 29.22
PGSC0003DMT400002449 Potato cytosol, nucleus, plasma membrane 34.45 28.35
PGSC0003DMT400074138 Potato plasma membrane 33.97 23.67
PGSC0003DMT400026113 Potato plasma membrane, plastid 27.27 23.36
Protein Annotations
EntrezGene:102582482MapMan:13.7.2.1GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737
GO:GO:0005783GO:GO:0005789GO:GO:0016020GO:GO:0016021InterPro:IPR003388UniProt:M1BTE1
PFAM:PF02453EnsemblPlantsGene:PGSC0003DMG400020351PGSC:PGSC0003DMG400020351EnsemblPlants:PGSC0003DMT400052428PFscan:PS50845PANTHER:PTHR10994
PANTHER:PTHR10994:SF65InterPro:ReticulonTMHMM:TMhelixUniParc:UPI0002956D34RefSeq:XP_006363068.1SEG:seg
Description
3-beta-hydroxy-delta5-steroid dehydrogenase [Source:PGSC_GENE;Acc:PGSC0003DMG400020351]
Coordinates
chr9:-:523972..526585
Molecular Weight (calculated)
23510.1 Da
IEP (calculated)
8.387
GRAVY (calculated)
0.552
Length
209 amino acids
Sequence
(BLAST)
001: MDSSDKLFNR QRSLHQILGG GFVADVVLWR RKDVTVGILV VTLFAWVVFE ISGYTLLSLV SSVLFLLFAI LFLWAKSAAI LNRPAPPLPH LYLSEEMVNE
101: AAYFIRNHVN MILSVSEDIA LGKDTNMYVK VSAGLMLVSV VGGLTDFLTL GYTSLVIVLT VPALYEKYED QVDAYVLMAY RKLWQLYHKF DAVCVNKVPI
201: LSLEKKKLS
Best Arabidopsis Sequence Match ( AT3G54120.1 )
(BLAST)
001: MSSSSDKLFN RDRTIHEILG GGIVADVMLW RKKNVSVGIV TVTIASWMVF EAFAYTIFTL ISSVLLLLLS ILFLWSKSAS ILNRPSPPLP EFQISEAMAE
101: EASIWLRIHV NKLLQVSHDI AMARDSELYT KVAVSLFLLS LIGSLMDFQT LCHTSVLVVM TVPAFYERYE DYIVGSIEFI CNKTRELYLR LEIWANPENK
201: KLS
Arabidopsis Description
RTNLB12Reticulon-like protein B12 [Source:UniProtKB/Swiss-Prot;Acc:Q9M392]
SUBAcon: [cytosol,plasma membrane,vacuole]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.