Factsheet for PGSC0003DMT400024814

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400018924
PGSC0003DMT400065786
PGSC0003DMT400074537

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G53180.1	PGSC0003DMT400065786	AT1G14340.1	21798944
AT3G53180.1	PGSC0003DMT400074537	AT2G31955.1	21798944
AT3G53180.1	PGSC0003DMT400018924	AT4G25660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400048935	Potato	cytosol	74.75	83.64
GSMUA_AchrUn_...	Banana	cytosol	47.84	45.0
KRH75546	Soybean	plastid	26.25	34.35
KRH32567	Soybean	endoplasmic reticulum	47.18	32.95
PGSC0003DMT400072666	Potato	cytosol	63.79	22.67
VIT_08s0007g04670.t01	Wine grape	cytosol	59.8	21.43
KRH32570	Soybean	cytosol, nucleus	58.47	21.05
CDX73575	Canola	cytosol	56.81	20.85
CDY13313	Canola	cytosol	55.81	20.54
Bra028548.1-P	Field mustard	cytosol	55.48	20.44
AT3G53180.1	Thale cress	cytosol	57.14	20.19
Bra006975.1-P	Field mustard	cytosol	56.15	19.95
CDX78151	Canola	cytosol	56.15	19.95
CDX67559	Canola	cytosol	54.82	19.83
HORVU1Hr1G038060.9	Barley	cytosol	53.82	19.19
TraesCS1B01G158600.1	Wheat	cytosol	53.16	19.0
TraesCS1A01G143000.1	Wheat	cytosol	52.82	18.91
TraesCS1D01G141800.1	Wheat	golgi	52.49	18.76
EER91525	Sorghum	cytosol	51.49	18.41
Zm00001d032815_P011	Maize	cytosol	51.16	18.29
Os10t0456500-02	Rice	plasma membrane	51.16	18.22
TraesCS6D01G065600.1	Wheat	cytosol	47.18	17.42
HORVU6Hr1G012290.5	Barley	cytosol	47.18	16.84
Zm00001d021367_P001	Maize	cytosol	1.33	1.93
GSMUA_AchrUn_...	Banana	cytosol	2.99	1.74
PGSC0003DMT400024816	Potato	cytosol	1.66	1.56
PGSC0003DMT400072398	Potato	cytosol	1.66	1.07
Zm00001d033947_P001	Maize	cytosol	0.0	0.0
Zm00001d044569_P001	Maize	cytosol	0.0	0.0
Zm00001d047936_P001	Maize	cytosol	0.0	0.0
Zm00001d031055_P001	Maize	cytosol	0.0	0.0
PGSC0003DMT400072665	Potato	cytosol	0.0	0.0
PGSC0003DMT400048929	Potato	cytosol, plastid	0.0	0.0
PGSC0003DMT400048927	Potato	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:PGSC0003DMT400024814	EnsemblPlantsGene:PGSC0003DMG401009595	Gene3D:3.20.20.140	PANTHER:PTHR20852	PANTHER:PTHR20852:SF65	PGSC:PGSC0003DMG401009595
SEG:seg	UniParc:UPI0002954454	UniProt:M1AKN2	MapMan:35.2	:	:

Description

Catalytic/ glutamate-ammonia ligase [Source:PGSC_GENE;Acc:PGSC0003DMG401009595]

Coordinates

chr1:-:27452241..27457303

Molecular Weight (calculated)

33548.4 Da

IEP (calculated)

4.984

GRAVY (calculated)

-0.006

Length

301 amino acids

Sequence
(BLAST)

001: MEKFEELKRA VESVEMVDAH AHNIVALDSN VPFLNCFSES IGGKTLSDSP NSVDFQVNLN EICELYGTSL SLDAVEESRR CLGLEASAAV CFKAARIVIL
101: LIDDGIKLDK KLDIKWHESL VPTVEGDKVV AFKSIIAHRS GLAINTEVTQ KEAEEGLNDI LSARKPVRIS NKSFSDYIFM HALEVTQNFN LPMQIDTSLE
201: EKDLDLRPGN PLNLRNLLED TRFTKNRLVL LHASFPFLKE ASYLASVYPQ VYLDFGLRIP KPNFNGLVSS VKEILDLAPI NKVMINSSGI AFAERFYLGI
301: A

Best Arabidopsis Sequence Match ( AT3G53180.1 )
(BLAST)

001: MEFSELKEAI EKIELVDAHA HNIVSLDSSF PFIGTFSEAA GDALTFAPHS LSFKRNLREI AQLYGTEVSL EAVEEHRKTS GLDSFTSKCF KEARISALLI
101: DDGLKLDKKH DIEWHRNFVP FVGRVLRIET LAEQILEEEC PGGYFYGSES TEPPVWDLDS FTKTFVERLN SLVPEIVALK TIAAYRSGLD IDTYVSKEVA
201: ENGLVEVLRA GKPVRIGNKG LIDYILTISL EVAVRRDLPL QIHTGFGDKD LDLRLSNPLH LRTLLEDKRF GKCRIVLLHA AYPFSKEASF LSSVYPQVYL
301: DFGLAVPKLS VHGMVSSVKE LLDLASIKKV MFSTDGYASP ETYYLGAKKA REVIFLVLSD ACASGDLSLM EAIDAAKDIF SRNSIGFYKL NIDTDSSSPQ
401: NIISPKLKIK EPDVQEDSSS FVRIIWVDTS GQQRCRAVQA QRFNRSVKKN GVGLTFASMG MTSFTDGPAE ESKLTGVGEI RLVPDLSTKQ TIPWTKQESM
501: VLADMQLKPG EAWGYCPRET LRRVAKVLKD EFDLVMNAGF ENEFYLLKNV VREGKEEYMP FDFGPYCATS SFDAASPIFH DIVPALESLN IEVEQFHAES
601: GKGQFEVSLG HTIASHAADN LVYTREVIRS VARKQGLLAT FVPKYDYCDI GSGSHVHLSL WKNGENVFPA SNNSSSHGIS SVGEEFMAGV LFHLPSILAI
701: IAPLPNSYDR IQPNTWSGAF QCWGKENREA ALRAASPPGT PDGLVTNFEI KSFDGSANPH LGLAVIMAAG IDGLRRHLQL PTPIDINPAD VAATLNRLPE
801: TLSEAVEALD KDKVLHDLLG QKLLVAIKGV RKAEVEYYSK NPDAYKQLIH RY

Arabidopsis Description

Nodulin/glutamine synthase-like protein [Source:UniProtKB/TrEMBL;Acc:F4J9A0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.