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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX73575 Canola cytosol 83.92 87.2
CDY13313 Canola cytosol 83.33 86.8
Bra028548.1-P Field mustard cytosol 83.22 86.78
CDX67559 Canola cytosol 84.27 86.3
CDX78151 Canola cytosol 85.21 85.71
Bra006975.1-P Field mustard cytosol 85.21 85.71
VIT_08s0007g04670.t01 Wine grape cytosol 69.48 70.48
KRH32570 Soybean cytosol, nucleus 66.31 67.58
PGSC0003DMT400072665 Potato cytosol 27.82 67.14
Solyc10g083830.1.1 Tomato extracellular 47.54 66.07
Zm00001d031055_P001 Maize cytosol 12.21 64.6
GSMUA_AchrUn_... Banana cytosol 38.62 63.64
Zm00001d047936_P001 Maize cytosol 13.15 62.57
Zm00001d044569_P001 Maize cytosol 13.15 62.57
Zm00001d033947_P001 Maize cytosol 8.22 62.5
TraesCS1B01G158600.1 Wheat cytosol 61.74 62.47
TraesCS1A01G143000.1 Wheat cytosol 61.62 62.43
TraesCS1D01G141800.1 Wheat golgi 61.62 62.35
HORVU1Hr1G038060.9 Barley cytosol 61.27 61.85
GSMUA_AchrUn_... Banana cytosol 22.89 60.94
Zm00001d032815_P011 Maize cytosol 60.21 60.93
EER91525 Sorghum cytosol 60.09 60.81
Os10t0456500-02 Rice plasma membrane 59.74 60.24
Solyc01g056400.1.1 Tomato endoplasmic reticulum, extracellular 4.58 59.09
PGSC0003DMT400024814 Potato cytosol 20.19 57.14
TraesCS6D01G065600.1 Wheat cytosol 54.23 56.69
Solyc10g083550.1.1 Tomato cytosol 25.94 55.39
HORVU6Hr1G012290.5 Barley cytosol 54.69 55.28
KRH32567 Soybean endoplasmic reticulum 26.88 53.13
Solyc10g083840.1.1 Tomato cytosol 9.98 52.8
KRH75546 Soybean plastid 14.2 52.61
PGSC0003DMT400048935 Potato cytosol 16.55 52.42
Solyc01g056390.1.1 Tomato cytosol, nucleus 6.69 52.29
PGSC0003DMT400072666 Potato cytosol 51.17 51.48
Solyc01g056430.1.1 Tomato cytosol 19.84 51.21
Solyc06g011330.1.1 Tomato cytosol 17.84 51.01
Solyc10g083850.1.1 Tomato cytosol 49.41 50.54
PGSC0003DMT400072398 Potato cytosol 27.11 49.25
Zm00001d021367_P001 Maize cytosol 11.62 47.83
PGSC0003DMT400024816 Potato cytosol 16.31 43.44
Solyc06g011290.1.1 Tomato cytosol 19.6 42.82
Solyc01g056450.1.1 Tomato cytosol 11.97 41.8
PGSC0003DMT400048929 Potato cytosol, plastid 8.22 40.7
PGSC0003DMT400048927 Potato cytosol 7.04 39.22
Protein Annotations
KEGG:00220+6.3.1.2KEGG:00250+6.3.1.2KEGG:00630+6.3.1.2KEGG:00910+6.3.1.2Gene3D:3.10.20.70Gene3D:3.20.20.140
Gene3D:3.30.590.10MapMan:35.2EntrezGene:824484ProteinID:AEE79045.1ArrayExpress:AT3G53180EnsemblPlantsGene:AT3G53180
RefSeq:AT3G53180TAIR:AT3G53180RefSeq:AT3G53180-TAIR-GEnsemblPlants:AT3G53180.1TAIR:AT3G53180.1InterPro:Amidohydro-rel
UniProt:F4J9A0GO:GO:0003674GO:GO:0003824GO:GO:0004356GO:GO:0005488GO:GO:0005515
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005829GO:GO:0006542
GO:GO:0006807GO:GO:0007275GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009605
GO:GO:0009607GO:GO:0009617GO:GO:0009653GO:GO:0009719GO:GO:0009737GO:GO:0009791
GO:GO:0009987GO:GO:0010311GO:GO:0016787GO:GO:0016874GO:GO:0043015GO:GO:0043621
GO:GO:0048829InterPro:Gln_synt_NInterPro:Gln_synth/guanido_kin_cat_domInterPro:Gln_synth_cat_domInterPro:IPR036651InterPro:Metal_Hydrolase
RefSeq:NP_190886.4PFAM:PF00120PFAM:PF04909PO:PO:0000005PO:PO:0000013PO:PO:0000037
PO:PO:0000230PO:PO:0000293PO:PO:0001054PO:PO:0001078PO:PO:0001081PO:PO:0001185
PO:PO:0004507PO:PO:0007064PO:PO:0007095PO:PO:0007098PO:PO:0007103PO:PO:0007115
PO:PO:0007123PO:PO:0007611PO:PO:0007616PO:PO:0008019PO:PO:0009005PO:PO:0009006
PO:PO:0009009PO:PO:0009010PO:PO:0009025PO:PO:0009029PO:PO:0009030PO:PO:0009031
PO:PO:0009032PO:PO:0009046PO:PO:0009047PO:PO:0009052PO:PO:0020030PO:PO:0020038
PO:PO:0020100PO:PO:0020137PO:PO:0025022PO:PO:0025281PANTHER:PTHR43785PANTHER:PTHR43785:SF2
SMART:SM01230SUPFAM:SSF51556SUPFAM:SSF54368SUPFAM:SSF55931UniParc:UPI00015057EESEG:seg
Description
Nodulin/glutamine synthase-like protein [Source:UniProtKB/TrEMBL;Acc:F4J9A0]
Coordinates
chr3:+:19706820..19711460
Molecular Weight (calculated)
94390.7 Da
IEP (calculated)
5.640
GRAVY (calculated)
-0.144
Length
852 amino acids
Sequence
(BLAST)
001: MEFSELKEAI EKIELVDAHA HNIVSLDSSF PFIGTFSEAA GDALTFAPHS LSFKRNLREI AQLYGTEVSL EAVEEHRKTS GLDSFTSKCF KEARISALLI
101: DDGLKLDKKH DIEWHRNFVP FVGRVLRIET LAEQILEEEC PGGYFYGSES TEPPVWDLDS FTKTFVERLN SLVPEIVALK TIAAYRSGLD IDTYVSKEVA
201: ENGLVEVLRA GKPVRIGNKG LIDYILTISL EVAVRRDLPL QIHTGFGDKD LDLRLSNPLH LRTLLEDKRF GKCRIVLLHA AYPFSKEASF LSSVYPQVYL
301: DFGLAVPKLS VHGMVSSVKE LLDLASIKKV MFSTDGYASP ETYYLGAKKA REVIFLVLSD ACASGDLSLM EAIDAAKDIF SRNSIGFYKL NIDTDSSSPQ
401: NIISPKLKIK EPDVQEDSSS FVRIIWVDTS GQQRCRAVQA QRFNRSVKKN GVGLTFASMG MTSFTDGPAE ESKLTGVGEI RLVPDLSTKQ TIPWTKQESM
501: VLADMQLKPG EAWGYCPRET LRRVAKVLKD EFDLVMNAGF ENEFYLLKNV VREGKEEYMP FDFGPYCATS SFDAASPIFH DIVPALESLN IEVEQFHAES
601: GKGQFEVSLG HTIASHAADN LVYTREVIRS VARKQGLLAT FVPKYDYCDI GSGSHVHLSL WKNGENVFPA SNNSSSHGIS SVGEEFMAGV LFHLPSILAI
701: IAPLPNSYDR IQPNTWSGAF QCWGKENREA ALRAASPPGT PDGLVTNFEI KSFDGSANPH LGLAVIMAAG IDGLRRHLQL PTPIDINPAD VAATLNRLPE
801: TLSEAVEALD KDKVLHDLLG QKLLVAIKGV RKAEVEYYSK NPDAYKQLIH RY
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.