Factsheet for PGSC0003DMT400048935

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400018924
PGSC0003DMT400065786
PGSC0003DMT400074537

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G53180.1	PGSC0003DMT400065786	AT1G14340.1	21798944
AT3G53180.1	PGSC0003DMT400074537	AT2G31955.1	21798944
AT3G53180.1	PGSC0003DMT400018924	AT4G25660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400024814	Potato	cytosol	83.64	74.75
Solyc01g056430.1.1	Tomato	cytosol	75.46	61.52
GSMUA_AchrUn_...	Banana	cytosol	42.38	35.62
KRH32567	Soybean	endoplasmic reticulum	43.12	26.91
KRH75546	Soybean	plastid	17.1	20.0
PGSC0003DMT400072666	Potato	cytosol	59.11	18.77
VIT_08s0007g04670.t01	Wine grape	cytosol	54.65	17.5
CDX73575	Canola	cytosol	52.42	17.2
Bra028548.1-P	Field mustard	cytosol	51.3	16.89
CDY13313	Canola	cytosol	51.3	16.87
KRH32570	Soybean	cytosol, nucleus	52.04	16.75
AT3G53180.1	Thale cress	cytosol	52.42	16.55
CDX67559	Canola	cytosol	50.56	16.35
Bra006975.1-P	Field mustard	cytosol	51.3	16.29
CDX78151	Canola	cytosol	51.3	16.29
TraesCS1B01G158600.1	Wheat	cytosol	49.44	15.8
TraesCS1A01G143000.1	Wheat	cytosol	49.07	15.7
TraesCS1D01G141800.1	Wheat	golgi	48.7	15.56
HORVU1Hr1G038060.9	Barley	cytosol	48.7	15.52
EER91525	Sorghum	cytosol	47.21	15.08
Zm00001d032815_P011	Maize	cytosol	47.21	15.08
Os10t0456500-02	Rice	plasma membrane	46.84	14.91
TraesCS6D01G065600.1	Wheat	cytosol	40.52	13.37
HORVU6Hr1G012290.5	Barley	cytosol	40.52	12.93
Zm00001d021367_P001	Maize	cytosol	1.49	1.93
GSMUA_AchrUn_...	Banana	cytosol	3.35	1.74
PGSC0003DMT400024816	Potato	cytosol	1.86	1.56
PGSC0003DMT400072398	Potato	cytosol	1.86	1.07
Zm00001d033947_P001	Maize	cytosol	0.0	0.0
Zm00001d044569_P001	Maize	cytosol	0.0	0.0
Zm00001d047936_P001	Maize	cytosol	0.0	0.0
Zm00001d031055_P001	Maize	cytosol	0.0	0.0
Solyc01g056450.1.1	Tomato	cytosol	0.0	0.0
PGSC0003DMT400072665	Potato	cytosol	0.0	0.0
PGSC0003DMT400048929	Potato	cytosol, plastid	0.0	0.0
PGSC0003DMT400048927	Potato	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:PGSC0003DMT400048935	EnsemblPlantsGene:PGSC0003DMG400019014	Gene3D:3.20.20.140	PANTHER:PTHR20852	PANTHER:PTHR20852:SF65	PGSC:PGSC0003DMG400019014
SEG:seg	UniParc:UPI0002955D29	UniProt:M1BN24	MapMan:35.2	:	:

Description

Glutamate-ammonia ligase [Source:PGSC_GENE;Acc:PGSC0003DMG400019014]

Coordinates

chr00:-:4394392..4403649

Molecular Weight (calculated)

30044.2 Da

IEP (calculated)

4.841

GRAVY (calculated)

0.020

Length

269 amino acids

Sequence
(BLAST)

001: MENFEELKRA VESVEMVDAH AHNIVALDSN VPFLNCFSES IGGKTLSDSP NSVDFQVNLN EICELYGSSL SLDAVEESRR CLGLEASAAV CFKAARIVIL
101: LIDDGIKLDK KLDIKWHESL VPTVGRILQV EHVAENILEK GSDGKLWALS SFMETFTKEL NSYPLNLEEK DLDLRPGNPL NLRNLLEDTR FTKNRLVLLH
201: ASFPFLKEAS YLASVYPQVY LDFGLRIPKP NFHGLVSSVK EILDLAPINK VMINSSGIAF AERFYLGIA

Best Arabidopsis Sequence Match ( AT3G53180.1 )
(BLAST)

001: MEFSELKEAI EKIELVDAHA HNIVSLDSSF PFIGTFSEAA GDALTFAPHS LSFKRNLREI AQLYGTEVSL EAVEEHRKTS GLDSFTSKCF KEARISALLI
101: DDGLKLDKKH DIEWHRNFVP FVGRVLRIET LAEQILEEEC PGGYFYGSES TEPPVWDLDS FTKTFVERLN SLVPEIVALK TIAAYRSGLD IDTYVSKEVA
201: ENGLVEVLRA GKPVRIGNKG LIDYILTISL EVAVRRDLPL QIHTGFGDKD LDLRLSNPLH LRTLLEDKRF GKCRIVLLHA AYPFSKEASF LSSVYPQVYL
301: DFGLAVPKLS VHGMVSSVKE LLDLASIKKV MFSTDGYASP ETYYLGAKKA REVIFLVLSD ACASGDLSLM EAIDAAKDIF SRNSIGFYKL NIDTDSSSPQ
401: NIISPKLKIK EPDVQEDSSS FVRIIWVDTS GQQRCRAVQA QRFNRSVKKN GVGLTFASMG MTSFTDGPAE ESKLTGVGEI RLVPDLSTKQ TIPWTKQESM
501: VLADMQLKPG EAWGYCPRET LRRVAKVLKD EFDLVMNAGF ENEFYLLKNV VREGKEEYMP FDFGPYCATS SFDAASPIFH DIVPALESLN IEVEQFHAES
601: GKGQFEVSLG HTIASHAADN LVYTREVIRS VARKQGLLAT FVPKYDYCDI GSGSHVHLSL WKNGENVFPA SNNSSSHGIS SVGEEFMAGV LFHLPSILAI
701: IAPLPNSYDR IQPNTWSGAF QCWGKENREA ALRAASPPGT PDGLVTNFEI KSFDGSANPH LGLAVIMAAG IDGLRRHLQL PTPIDINPAD VAATLNRLPE
801: TLSEAVEALD KDKVLHDLLG QKLLVAIKGV RKAEVEYYSK NPDAYKQLIH RY

Arabidopsis Description

Nodulin/glutamine synthase-like protein [Source:UniProtKB/TrEMBL;Acc:F4J9A0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.