Skip to main content
crop-pal logo
Canola
Search for another protein from :
Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 2
  • mitochondrion 1
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:plastid
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX79447
CDX81033
CDX84035
CDX84751
CDX89402
CDX89404
CDX94426
CDX94429
CDX96860
CDY49093
CDY49480
CDY58876
CDY62016
CDY66007

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G53180.1 CDX84035 AT1G14340.1 21798944
AT3G53180.1 CDX96860 AT1G14340.1 21798944
AT3G53180.1 CDY49093 AT1G14340.1 21798944
AT3G53180.1 CDY62016 AT1G14340.1 21798944
AT3G53180.1 CDX79447 AT2G31955.1 21798944
AT3G53180.1 CDX84751 AT2G31955.1 21798944
AT3G53180.1 CDX89402 AT4G25660.1 21798944
AT3G53180.1 CDX89404 AT4G25660.1 21798944
AT3G53180.1 CDX94426 AT4G25660.1 21798944
AT3G53180.1 CDX94429 AT4G25660.1 21798944
AT3G53180.1 CDY49480 AT4G25660.1 21798944
AT3G53180.1 CDY66007 AT4G25660.1 21798944
AT3G53180.1 CDX81033 AT5G07110.1 21798944
AT3G53180.1 CDY58876 AT5G07110.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra028548.1-P Field mustard cytosol 94.95 96.7
CDY13313 Canola cytosol 94.59 96.21
CDX73575 Canola cytosol 86.18 87.44
CDX78151 Canola cytosol 87.26 85.71
AT3G53180.1 Thale cress cytosol 86.3 84.27
VIT_08s0007g04670.t01 Wine grape cytosol 68.03 67.38
Solyc10g083830.1.1 Tomato extracellular 49.16 66.72
PGSC0003DMT400072665 Potato cytosol 28.25 66.57
KRH32570 Soybean cytosol, nucleus 64.42 64.11
Zm00001d031055_P001 Maize cytosol 11.9 61.49
GSMUA_AchrUn_... Banana cytosol 37.98 61.12
GSMUA_AchrUn_... Banana cytosol 23.08 60.0
TraesCS1A01G143000.1 Wheat cytosol 60.58 59.93
TraesCS1D01G141800.1 Wheat golgi 60.58 59.86
TraesCS1B01G158600.1 Wheat cytosol 60.58 59.86
Zm00001d044569_P001 Maize cytosol 12.86 59.78
Zm00001d047936_P001 Maize cytosol 12.86 59.78
HORVU1Hr1G038060.9 Barley cytosol 60.46 59.6
EER91525 Sorghum cytosol 59.74 59.03
Zm00001d032815_P011 Maize cytosol 59.74 59.03
Os10t0456500-02 Rice plasma membrane 59.62 58.7
Zm00001d033947_P001 Maize cytosol 7.81 58.04
Solyc01g056400.1.1 Tomato endoplasmic reticulum, extracellular 4.57 57.58
TraesCS6D01G065600.1 Wheat cytosol 53.73 54.85
PGSC0003DMT400024814 Potato cytosol 19.83 54.82
Solyc10g083550.1.1 Tomato cytosol 26.2 54.64
HORVU6Hr1G012290.5 Barley cytosol 54.69 53.97
KRH32567 Soybean endoplasmic reticulum 27.04 52.2
KRH75546 Soybean plastid 14.3 51.74
PGSC0003DMT400072666 Potato cytosol 52.04 51.12
Solyc06g011330.1.1 Tomato cytosol 18.27 51.01
PGSC0003DMT400048935 Potato cytosol 16.35 50.56
Solyc10g083850.1.1 Tomato cytosol 49.76 49.7
Solyc10g083840.1.1 Tomato cytosol 9.62 49.69
PGSC0003DMT400072398 Potato cytosol 27.64 49.04
Solyc01g056390.1.1 Tomato cytosol, nucleus 6.37 48.62
Solyc01g056430.1.1 Tomato cytosol 19.23 48.48
Zm00001d021367_P001 Maize cytosol 11.18 44.93
Solyc01g056450.1.1 Tomato cytosol 12.26 41.8
PGSC0003DMT400024816 Potato cytosol 15.99 41.56
Solyc06g011290.1.1 Tomato cytosol 19.47 41.54
PGSC0003DMT400048929 Potato cytosol, plastid 8.17 39.53
PGSC0003DMT400048927 Potato cytosol 6.73 36.6
Protein Annotations
KEGG:00220+6.3.1.2KEGG:00250+6.3.1.2KEGG:00630+6.3.1.2KEGG:00910+6.3.1.2Gene3D:3.10.20.70Gene3D:3.20.20.140
Gene3D:3.30.590.10MapMan:35.2GO:A0A078BV73InterPro:Amidohydro-relEnsemblPlants:CDX67559ProteinID:CDX67559
ProteinID:CDX67559.1GO:GO:0003674GO:GO:0003824GO:GO:0004356GO:GO:0006542GO:GO:0006807
GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987GO:GO:0016787EnsemblPlantsGene:GSBRNA2T00098692001
InterPro:Gln_synt_NInterPro:Gln_synt_b-graspInterPro:Gln_synth/guanido_kin_cat_domInterPro:Gln_synth_cat_domInterPro:IPR036651InterPro:Metal_Hydrolase
PFAM:PF00120PFAM:PF04909PFAM:PF16952PANTHER:PTHR43785PANTHER:PTHR43785:SF2MetaCyc:PWY-381
MetaCyc:PWY-5675MetaCyc:PWY-6549MetaCyc:PWY-6963MetaCyc:PWY-6964SMART:SM01230SUPFAM:SSF51556
SUPFAM:SSF54368SUPFAM:SSF55931UniParc:UPI0004EF3AD0SEG:seg::
Description
BnaA07g15990D
Coordinates
chrLK031787:+:928435..932303
Molecular Weight (calculated)
92473.2 Da
IEP (calculated)
5.812
GRAVY (calculated)
-0.158
Length
832 amino acids
Sequence
(BLAST)
001: MEFKELKEAI DQVELVDAHA HNIVSLDSSF PFIRTFSEAT GDSLSFAPHS LSFKRNLREV AQLYGSEVSL EAIEKHRQTL GLHSLTSKCF NEARISALLI
101: DDGLKLDKKH DTEWHRNFVP YVGRVLRIET LAEQILDEES PDDSSWTLDS FTKAFIVALK TIAAYRSGLD IDTHVSKEVA ENGLVEVLQA EKLVRIGNKG
201: LIDYILTLSL EVAERYDLPL QIHTGFGDRD LDLRLSNPLH LRTLLEDKRF EKCRIVLLHA SYPFSKEASY LSSVYPQVFL DFGLAVPKLS AHGMVSSVKE
301: LLHLASTKKV MFSTDGYATP ETYYLGAKKA REVIFLVLRD ACVGGDLSLM EAIDAAKDIL SRNAIAFYNI DVDTSSSIPQ SRISPKSQIE EPHVQEDSSS
401: FVRVIWVDTS GQQRCRVVQA QRFNRSVKKN GIGLTHASMG MTSFYDGPAE ESKLTGIGEI RLVPDLSTKR IIPWTKQESM VLADMLLKPG EAWDYCPRET
501: LRRVTNVLKD EFDLVMNAGF ENEFYLLKNV VREGKEDYVP FEVGPYCSTS SYDAAAKIFH EIIPALESLN IAVEQFHAES GKGQFEVSLG HTIAFHAADN
601: LVYTREVIRS VARKHGLLAT FVPKYDLCDI GSGSHVHISL WKNGENVFPA SDESSAHGMS SIGEEFMAGV LFHLPSIFAV LAPLPNSYDR IQPNTFSGAF
701: QCWGKENREA AIRTASPPGA PDGLVTNFEI KACDGSTNPH LSLAIIMAAG IDGLRRHLQL PDPIDTNPAD VAATLNRLPE TLSEAVEALE KDKVLHELLG
801: QNLLVAITGV RKAEVQYYSK NPGASKQLIH RY
Best Arabidopsis Sequence Match ( AT3G53180.1 )
(BLAST)
001: MEFSELKEAI EKIELVDAHA HNIVSLDSSF PFIGTFSEAA GDALTFAPHS LSFKRNLREI AQLYGTEVSL EAVEEHRKTS GLDSFTSKCF KEARISALLI
101: DDGLKLDKKH DIEWHRNFVP FVGRVLRIET LAEQILEEEC PGGYFYGSES TEPPVWDLDS FTKTFVERLN SLVPEIVALK TIAAYRSGLD IDTYVSKEVA
201: ENGLVEVLRA GKPVRIGNKG LIDYILTISL EVAVRRDLPL QIHTGFGDKD LDLRLSNPLH LRTLLEDKRF GKCRIVLLHA AYPFSKEASF LSSVYPQVYL
301: DFGLAVPKLS VHGMVSSVKE LLDLASIKKV MFSTDGYASP ETYYLGAKKA REVIFLVLSD ACASGDLSLM EAIDAAKDIF SRNSIGFYKL NIDTDSSSPQ
401: NIISPKLKIK EPDVQEDSSS FVRIIWVDTS GQQRCRAVQA QRFNRSVKKN GVGLTFASMG MTSFTDGPAE ESKLTGVGEI RLVPDLSTKQ TIPWTKQESM
501: VLADMQLKPG EAWGYCPRET LRRVAKVLKD EFDLVMNAGF ENEFYLLKNV VREGKEEYMP FDFGPYCATS SFDAASPIFH DIVPALESLN IEVEQFHAES
601: GKGQFEVSLG HTIASHAADN LVYTREVIRS VARKQGLLAT FVPKYDYCDI GSGSHVHLSL WKNGENVFPA SNNSSSHGIS SVGEEFMAGV LFHLPSILAI
701: IAPLPNSYDR IQPNTWSGAF QCWGKENREA ALRAASPPGT PDGLVTNFEI KSFDGSANPH LGLAVIMAAG IDGLRRHLQL PTPIDINPAD VAATLNRLPE
801: TLSEAVEALD KDKVLHDLLG QKLLVAIKGV RKAEVEYYSK NPDAYKQLIH RY
Arabidopsis Description
Nodulin/glutamine synthase-like protein [Source:UniProtKB/TrEMBL;Acc:F4J9A0]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.